JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	SAS	cseq	genename	chr	start	end
PCDH15_chr10_53797771_54806231	0/0	c0011	5226	1	1	0	0	0	copy fasta	PCDH15	chr10	53797771	54806231
PCDH15_chr10_53797771_54806231	0/0	c0012	5223	1	1	0	0	0	copy fasta	PCDH15	chr10	53797771	54806231
PCDH15_chr10_53797771_54806231	0/0	c0013	5223	1	1	0	0	0	copy fasta	PCDH15	chr10	53797771	54806231
PCDH15_chr10_53797771_54806231	0/0	c0014	5223	1	0	1	0	0	copy fasta	PCDH15	chr10	53797771	54806231
PCDH15_chr10_53797771_54806231	0/0	c0015	5223	1	1	0	0	0	copy fasta	PCDH15	chr10	53797771	54806231
PCDH15_chr10_53797771_54806231	0/0	c0016	5223	1	1	0	0	0	copy fasta	PCDH15	chr10	53797771	54806231
PCDH15_chr10_53797771_54806231	0/0	c0017	5223	1	0	0	0	1	copy fasta	PCDH15	chr10	53797771	54806231
PCDH15_chr10_53797771_54806231	0/0	c0018	5223	1	1	0	0	0	copy fasta	PCDH15	chr10	53797771	54806231
PCDH15_chr10_53797771_54806231	0/0	c0019	5223	1	1	0	0	0	copy fasta	PCDH15	chr10	53797771	54806231
PCDH15_chr10_53797771_54806231	0/0	c0020	5226	1	0	1	0	0	copy fasta	PCDH15	chr10	53797771	54806231
PCDH15_chr10_53797771_54806231	0/0	c0021	5223	1	1	0	0	0	copy fasta	PCDH15	chr10	53797771	54806231
PCDH15_chr10_53797771_54806231	0/0	c0022	5223	1	0	0	0	1	copy fasta	PCDH15	chr10	53797771	54806231
PCDH15_chr10_53797771_54806231	0/0	c0023	5226	1	0	1	0	0	copy fasta	PCDH15	chr10	53797771	54806231
PCDH15_chr10_53797771_54806231	0/0	c0024	5223	1	1	0	0	0	copy fasta	PCDH15	chr10	53797771	54806231
PCDH15_chr10_53797771_54806231	0/0	c0025	5223	1	1	0	0	0	copy fasta	PCDH15	chr10	53797771	54806231
PCDH15_chr10_53797771_54806231	0/0	c0026	5223	1	1	0	0	0	copy fasta	PCDH15	chr10	53797771	54806231
PCDH15_chr10_53797771_54806231	0/0	c0027	5223	1	1	0	0	0	copy fasta	PCDH15	chr10	53797771	54806231
PCDH15_chr10_53797771_54806231	0/0	c0028	5223	1	1	0	0	0	copy fasta	PCDH15	chr10	53797771	54806231
PCDH15_chr10_53797771_54806231	0/0	c0029	5223	1	1	0	0	0	copy fasta	PCDH15	chr10	53797771	54806231
PCDH15_chr10_53797771_54806231	0/0	c0030	5226	1	1	0	0	0	copy fasta	PCDH15	chr10	53797771	54806231
PCDH15_chr10_53797771_54806231	0/0	c0031	5223	1	1	0	0	0	copy fasta	PCDH15	chr10	53797771	54806231
PCDH15_chr10_53797771_54806231	0/0	c0032	5223	1	0	1	0	0	copy fasta	PCDH15	chr10	53797771	54806231
PCDH15_chr10_53797771_54806231	0/0	c0033	5236	1	0	1	0	0	copy fasta	PCDH15	chr10	53797771	54806231
PCDH15_chr10_53797771_54806231	0/0	c0034	5226	1	1	0	0	0	copy fasta	PCDH15	chr10	53797771	54806231
PCDH15_chr10_53797771_54806231	0/0	c0035	5223	1	0	1	0	0	copy fasta	PCDH15	chr10	53797771	54806231
PCDH15_chr10_53797771_54806231	0/0	c0036	5223	1	1	0	0	0	copy fasta	PCDH15	chr10	53797771	54806231
PCDH15_chr10_53797771_54806231	0/0	c0037	5226	1	1	0	0	0	copy fasta	PCDH15	chr10	53797771	54806231
PCDH15_chr10_53797771_54806231	0/0	c0038	5223	1	0	1	0	0	copy fasta	PCDH15	chr10	53797771	54806231
PCDH15_chr10_53797771_54806231	0/0	c0039	5223	1	0	0	0	1	copy fasta	PCDH15	chr10	53797771	54806231
PCDH15_chr10_53797771_54806231	0/0	c0040	5223	1	0	1	0	0	copy fasta	PCDH15	chr10	53797771	54806231
PCDH15_chr10_53797771_54806231	0/0	c0041	5223	1	0	0	0	1	copy fasta	PCDH15	chr10	53797771	54806231
PCDH15_chr10_53797771_54806231	0/0	c0042	5223	1	0	0	0	1	copy fasta	PCDH15	chr10	53797771	54806231
PCDH15_chr10_53816099_54806231	1/1	c0001	5868	16	5	7	1	1	copy fasta	PCDH15	chr10	53816099	54806231
PCDH15_chr10_53816099_54806231	0/0	c0002	5868	10	7	2	0	1	copy fasta	PCDH15	chr10	53816099	54806231
PCDH15_chr10_53816099_54806231	0/0	c0003	5868	7	3	3	0	1	copy fasta	PCDH15	chr10	53816099	54806231
PCDH15_chr10_53816099_54806231	0/0	c0004	5868	7	2	2	1	2	copy fasta	PCDH15	chr10	53816099	54806231
PCDH15_chr10_53816099_54806231	0/0	c0005	5868	3	1	1	0	1	copy fasta	PCDH15	chr10	53816099	54806231
PCDH15_chr10_53816099_54806231	0/0	c0006	5868	3	1	1	1	0	copy fasta	PCDH15	chr10	53816099	54806231
PCDH15_chr10_53816099_54806231	0/0	c0007	5868	3	2	1	0	0	copy fasta	PCDH15	chr10	53816099	54806231
PCDH15_chr10_53816099_54806231	0/0	c0008	5868	3	2	0	0	1	copy fasta	PCDH15	chr10	53816099	54806231
PCDH15_chr10_53816099_54806231	0/0	c0009	5868	2	1	0	0	1	copy fasta	PCDH15	chr10	53816099	54806231
PCDH15_chr10_53816099_54806231	0/0	c0010	5868	2	1	1	0	0	copy fasta	PCDH15	chr10	53816099	54806231
PCDH15_chr10_53816099_54806231	0/0	c0011	5868	1	1	0	0	0	copy fasta	PCDH15	chr10	53816099	54806231
PCDH15_chr10_53816099_54806231	0/0	c0012	5868	1	1	0	0	0	copy fasta	PCDH15	chr10	53816099	54806231
PCDH15_chr10_53816099_54806231	0/0	c0013	5868	1	0	1	0	0	copy fasta	PCDH15	chr10	53816099	54806231
PCDH15_chr10_53816099_54806231	0/0	c0014	5868	1	0	0	0	1	copy fasta	PCDH15	chr10	53816099	54806231
PCDH15_chr10_53816099_54806231	0/0	c0015	5868	1	1	0	0	0	copy fasta	PCDH15	chr10	53816099	54806231
PCDH15_chr10_53816099_54806231	0/0	c0016	5868	1	0	1	0	0	copy fasta	PCDH15	chr10	53816099	54806231
PCDH15_chr10_53816099_54806231	0/0	c0017	5868	1	1	0	0	0	copy fasta	PCDH15	chr10	53816099	54806231
PCDH15_chr10_53816099_54806231	0/0	c0018	5868	1	0	1	0	0	copy fasta	PCDH15	chr10	53816099	54806231