JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PCDH15_chr10_53816099_54806231	0/0	c0019	5868	1	0	1	0	0	0	copy fasta	PCDH15	chr10	53816099	54806231
PCDH15_chr10_53816099_54806231	0/0	c0020	5868	1	1	0	0	0	0	copy fasta	PCDH15	chr10	53816099	54806231
PCDH15_chr10_53816099_54806231	0/0	c0021	5868	1	0	0	0	0	1	copy fasta	PCDH15	chr10	53816099	54806231
PCDH15_chr10_53816099_54806231	0/0	c0022	5868	1	1	0	0	0	0	copy fasta	PCDH15	chr10	53816099	54806231
PCDH15_chr10_53816099_54806231	0/0	c0023	5868	1	1	0	0	0	0	copy fasta	PCDH15	chr10	53816099	54806231
PCDH15_chr10_53816099_54806231	0/0	c0024	5868	1	0	0	1	0	0	copy fasta	PCDH15	chr10	53816099	54806231
PCDH15_chr10_53816099_54806231	0/0	c0025	5868	1	1	0	0	0	0	copy fasta	PCDH15	chr10	53816099	54806231
PCDH15_chr10_53816099_54806231	0/0	c0026	5865	1	1	0	0	0	0	copy fasta	PCDH15	chr10	53816099	54806231
PCDH15_chr10_53816099_54806231	0/0	c0027	5805	1	1	0	0	0	0	copy fasta	PCDH15	chr10	53816099	54806231
PCDH15_chr10_53816099_54806231	0/0	c0028	5865	1	1	0	0	0	0	copy fasta	PCDH15	chr10	53816099	54806231
PCDH15_chr10_53816099_54806231	0/0	c0029	5868	1	1	0	0	0	0	copy fasta	PCDH15	chr10	53816099	54806231
PCDH15_chr10_53816099_54806231	0/0	c0030	5868	1	1	0	0	0	0	copy fasta	PCDH15	chr10	53816099	54806231
PCDH15_chr10_53816099_54806231	0/0	c0031	5868	1	1	0	0	0	0	copy fasta	PCDH15	chr10	53816099	54806231
PCDH15_chr10_53816099_54806231	0/0	c0032	5890	1	1	0	0	0	0	copy fasta	PCDH15	chr10	53816099	54806231
PCDH15_chr10_53816099_54806231	0/0	c0033	5868	1	1	0	0	0	0	copy fasta	PCDH15	chr10	53816099	54806231
PCDH15_chr10_53816099_54806231	0/0	c0034	5868	1	1	0	0	0	0	copy fasta	PCDH15	chr10	53816099	54806231
PCDH15_chr10_53816099_54806231	0/0	c0035	5868	1	0	0	0	0	1	copy fasta	PCDH15	chr10	53816099	54806231
PCDH15_chr10_53816099_54806231	0/0	c0036	5868	1	1	0	0	0	0	copy fasta	PCDH15	chr10	53816099	54806231
PCDH15_chr10_53816099_54806231	0/0	c0037	5868	1	1	0	0	0	0	copy fasta	PCDH15	chr10	53816099	54806231
PCDH15_chr10_53816099_54806231	0/0	c0038	5865	1	1	0	0	0	0	copy fasta	PCDH15	chr10	53816099	54806231
PCDH15_chr10_53816099_54806231	0/0	c0039	5868	1	1	0	0	0	0	copy fasta	PCDH15	chr10	53816099	54806231
PCDH15_chr10_53816099_54806231	0/0	c0040	5868	1	0	1	0	0	0	copy fasta	PCDH15	chr10	53816099	54806231
PCDH15_chr10_53816099_54806231	0/0	c0041	5868	1	1	0	0	0	0	copy fasta	PCDH15	chr10	53816099	54806231
PCDH15_chr10_53816099_54806231	0/0	c0042	5868	1	0	0	1	0	0	copy fasta	PCDH15	chr10	53816099	54806231
PCDH15_chr10_53816099_54806231	0/0	c0043	5865	1	1	0	0	0	0	copy fasta	PCDH15	chr10	53816099	54806231
PCDH15_chr10_53816099_54806231	0/0	c0044	5868	1	0	0	1	0	0	copy fasta	PCDH15	chr10	53816099	54806231
PCDH15_chr10_53816099_54806231	0/0	c0045	5868	1	0	0	0	0	1	copy fasta	PCDH15	chr10	53816099	54806231
PCDH15_chr10_53816099_54806231	0/0	c0046	5868	1	0	1	0	0	0	copy fasta	PCDH15	chr10	53816099	54806231
PCDH15_chr10_53816099_54806231	0/0	c0047	5868	1	0	0	0	0	1	copy fasta	PCDH15	chr10	53816099	54806231
PCDH15_chr10_53816099_54806231	0/0	c0048	5865	1	0	0	0	0	1	copy fasta	PCDH15	chr10	53816099	54806231
PCDH17_chr13_57626744_57734311	1/1	c0001	3480	287	63	66	122	10	24	copy fasta	PCDH17	chr13	57626744	57734311
PCDH17_chr13_57626744_57734311	0/0	c0002	3480	4	4	0	0	0	0	copy fasta	PCDH17	chr13	57626744	57734311
PCDH17_chr13_57626744_57734311	0/0	c0003	3480	3	0	0	2	1	0	copy fasta	PCDH17	chr13	57626744	57734311
PCDH17_chr13_57626744_57734311	0/0	c0004	3480	2	2	0	0	0	0	copy fasta	PCDH17	chr13	57626744	57734311
PCDH17_chr13_57626744_57734311	0/0	c0005	3480	1	0	0	1	0	0	copy fasta	PCDH17	chr13	57626744	57734311
PCDH17_chr13_57626744_57734311	0/0	c0006	3480	1	0	1	0	0	0	copy fasta	PCDH17	chr13	57626744	57734311
PCDH17_chr13_57626744_57734311	0/0	c0007	3480	1	0	0	0	0	1	copy fasta	PCDH17	chr13	57626744	57734311
PCDH17_chr13_57626744_57734311	0/0	c0008	3480	1	0	0	1	0	0	copy fasta	PCDH17	chr13	57626744	57734311
PCDH17_chr13_57626744_57734311	0/0	c0009	3480	1	0	0	1	0	0	copy fasta	PCDH17	chr13	57626744	57734311
PCDH17_chr13_57626744_57734311	0/0	c0010	3480	1	0	0	1	0	0	copy fasta	PCDH17	chr13	57626744	57734311
PCDH17_chr13_57626744_57734311	0/0	c0011	3480	1	0	0	1	0	0	copy fasta	PCDH17	chr13	57626744	57734311
PCDH17_chr13_57626744_57734311	0/0	c0012	3480	1	1	0	0	0	0	copy fasta	PCDH17	chr13	57626744	57734311
PCDH17_chr13_57626744_57734311	0/0	c0013	3480	1	0	0	1	0	0	copy fasta	PCDH17	chr13	57626744	57734311
PCDH17_chr13_57626744_57734311	0/0	c0014	3480	1	0	1	0	0	0	copy fasta	PCDH17	chr13	57626744	57734311
PCDH17_chr13_57626744_57734311	0/0	c0015	3480	1	0	0	0	1	0	copy fasta	PCDH17	chr13	57626744	57734311
PCDH17_chr13_57626744_57734311	0/0	c0016	3480	1	0	0	0	0	1	copy fasta	PCDH17	chr13	57626744	57734311
PCDH17_chr13_57626744_57734311	0/0	c0017	3480	1	0	0	1	0	0	copy fasta	PCDH17	chr13	57626744	57734311
PCDH17_chr13_57626744_57734311	0/0	c0018	3480	1	0	0	1	0	0	copy fasta	PCDH17	chr13	57626744	57734311
PCDH18_chr4_137513918_137537494	0/0	c0001	3408	218	73	39	83	6	17	copy fasta	PCDH18	chr4	137513918	137537494
PCDH18_chr4_137513918_137537494	1/1	c0002	3408	154	7	28	81	12	24	copy fasta	PCDH18	chr4	137513918	137537494