JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PCDH18_chr4_137513918_137537494	0/0	c0003	3408	5	4	1	0	0	0	copy fasta	PCDH18	chr4	137513918	137537494
PCDH18_chr4_137513918_137537494	0/0	c0004	3408	5	0	2	3	0	0	copy fasta	PCDH18	chr4	137513918	137537494
PCDH18_chr4_137513918_137537494	0/0	c0005	3408	4	0	0	4	0	0	copy fasta	PCDH18	chr4	137513918	137537494
PCDH18_chr4_137513918_137537494	0/0	c0006	3408	2	2	0	0	0	0	copy fasta	PCDH18	chr4	137513918	137537494
PCDH18_chr4_137513918_137537494	0/0	c0007	3408	2	2	0	0	0	0	copy fasta	PCDH18	chr4	137513918	137537494
PCDH18_chr4_137513918_137537494	0/0	c0008	3408	2	0	0	2	0	0	copy fasta	PCDH18	chr4	137513918	137537494
PCDH18_chr4_137513918_137537494	0/0	c0009	3408	2	0	0	0	0	2	copy fasta	PCDH18	chr4	137513918	137537494
PCDH18_chr4_137513918_137537494	0/0	c0010	3408	2	0	0	2	0	0	copy fasta	PCDH18	chr4	137513918	137537494
PCDH18_chr4_137513918_137537494	0/0	c0011	3408	1	0	0	0	0	1	copy fasta	PCDH18	chr4	137513918	137537494
PCDH18_chr4_137513918_137537494	0/0	c0012	3408	1	0	0	1	0	0	copy fasta	PCDH18	chr4	137513918	137537494
PCDH18_chr4_137513918_137537494	0/0	c0013	3408	1	1	0	0	0	0	copy fasta	PCDH18	chr4	137513918	137537494
PCDH18_chr4_137513918_137537494	0/0	c0014	3408	1	0	0	1	0	0	copy fasta	PCDH18	chr4	137513918	137537494
PCDH18_chr4_137513918_137537494	0/0	c0015	3408	1	0	0	0	0	1	copy fasta	PCDH18	chr4	137513918	137537494
PCDH18_chr4_137513918_137537494	0/0	c0016	3408	1	0	1	0	0	0	copy fasta	PCDH18	chr4	137513918	137537494
PCDH18_chr4_137513918_137537494	0/0	c0017	3408	1	1	0	0	0	0	copy fasta	PCDH18	chr4	137513918	137537494
PCDH18_chr4_137513918_137537494	0/0	c0018	3408	1	0	1	0	0	0	copy fasta	PCDH18	chr4	137513918	137537494
PCDH18_chr4_137513918_137537494	0/0	c0019	3408	1	0	0	0	0	1	copy fasta	PCDH18	chr4	137513918	137537494
PCDH18_chr4_137513918_137537494	0/0	c0020	3408	1	0	0	1	0	0	copy fasta	PCDH18	chr4	137513918	137537494
PCDH19_chrX_100286644_100415273	1/1	c0001	3447	193	64	33	65	7	22	copy fasta	PCDH19	chrX	100286644	100415273
PCDH19_chrX_100286644_100415273	0/0	c0002	3447	37	3	9	19	0	6	copy fasta	PCDH19	chrX	100286644	100415273
PCDH19_chrX_100286644_100415273	0/0	c0003	3447	13	0	8	5	0	0	copy fasta	PCDH19	chrX	100286644	100415273
PCDH19_chrX_100286644_100415273	0/0	c0004	3447	9	0	6	0	2	1	copy fasta	PCDH19	chrX	100286644	100415273
PCDH19_chrX_100286644_100415273	0/0	c0005	3447	8	0	0	8	0	0	copy fasta	PCDH19	chrX	100286644	100415273
PCDH19_chrX_100286644_100415273	0/0	c0006	3447	5	5	0	0	0	0	copy fasta	PCDH19	chrX	100286644	100415273
PCDH19_chrX_100286644_100415273	0/0	c0007	3447	4	0	0	4	0	0	copy fasta	PCDH19	chrX	100286644	100415273
PCDH19_chrX_100286644_100415273	0/0	c0008	3447	2	2	0	0	0	0	copy fasta	PCDH19	chrX	100286644	100415273
PCDH19_chrX_100286644_100415273	0/0	c0009	3447	1	0	0	1	0	0	copy fasta	PCDH19	chrX	100286644	100415273
PCDH19_chrX_100286644_100415273	0/0	c0010	3447	1	0	0	1	0	0	copy fasta	PCDH19	chrX	100286644	100415273
PCDH19_chrX_100286644_100415273	0/0	c0011	3448	1	0	0	1	0	0	copy fasta	PCDH19	chrX	100286644	100415273
PCDH19_chrX_100286644_100415273	0/0	c0012	3447	1	0	0	1	0	0	copy fasta	PCDH19	chrX	100286644	100415273
PCDH19_chrX_100286644_100415273	0/0	c0013	3447	1	0	0	1	0	0	copy fasta	PCDH19	chrX	100286644	100415273
PCDH19_chrX_100286644_100415273	0/0	c0014	3447	1	0	0	1	0	0	copy fasta	PCDH19	chrX	100286644	100415273
PCDH19_chrX_100286644_100415273	0/0	c0015	3447	1	0	0	1	0	0	copy fasta	PCDH19	chrX	100286644	100415273
PCDH19_chrX_100286644_100415273	0/0	c0016	3447	1	1	0	0	0	0	copy fasta	PCDH19	chrX	100286644	100415273
PCDH19_chrX_100286644_100415273	0/0	c0017	3447	1	0	0	0	0	1	copy fasta	PCDH19	chrX	100286644	100415273
PCDH19_chrX_100286644_100415273	0/0	c0018	3447	1	1	0	0	0	0	copy fasta	PCDH19	chrX	100286644	100415273
PCDH1_chr5_141848090_141883410	1/1	c0001	3714	148	15	40	72	7	12	copy fasta	PCDH1	chr5	141848090	141883410
PCDH1_chr5_141848090_141883410	0/0	c0002	3714	88	5	7	55	8	13	copy fasta	PCDH1	chr5	141848090	141883410
PCDH1_chr5_141848090_141883410	0/0	c0003	3714	57	44	8	2	1	2	copy fasta	PCDH1	chr5	141848090	141883410
PCDH1_chr5_141848090_141883410	0/0	c0004	3714	34	3	7	17	0	7	copy fasta	PCDH1	chr5	141848090	141883410
PCDH1_chr5_141848090_141883410	0/0	c0005	3714	28	15	5	3	0	5	copy fasta	PCDH1	chr5	141848090	141883410
PCDH1_chr5_141848090_141883410	0/0	c0006	3714	6	6	0	0	0	0	copy fasta	PCDH1	chr5	141848090	141883410
PCDH1_chr5_141848090_141883410	0/0	c0007	3714	3	0	3	0	0	0	copy fasta	PCDH1	chr5	141848090	141883410
PCDH1_chr5_141848090_141883410	0/0	c0008	3714	3	0	0	2	0	1	copy fasta	PCDH1	chr5	141848090	141883410
PCDH1_chr5_141848090_141883410	0/0	c0009	3714	2	0	0	2	0	0	copy fasta	PCDH1	chr5	141848090	141883410
PCDH1_chr5_141848090_141883410	0/0	c0010	3714	2	2	0	0	0	0	copy fasta	PCDH1	chr5	141848090	141883410
PCDH1_chr5_141848090_141883410	0/0	c0011	3714	1	0	1	0	0	0	copy fasta	PCDH1	chr5	141848090	141883410
PCDH1_chr5_141848090_141883410	0/0	c0012	3714	1	0	0	0	0	1	copy fasta	PCDH1	chr5	141848090	141883410
PCDH1_chr5_141848090_141883410	0/0	c0013	3714	1	1	0	0	0	0	copy fasta	PCDH1	chr5	141848090	141883410
PCDH1_chr5_141848090_141883410	0/0	c0014	3714	1	0	0	0	0	1	copy fasta	PCDH1	chr5	141848090	141883410