JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PCDH1_chr5_141848090_141883410	0/0	c0015	3714	1	0	0	0	0	1	copy fasta	PCDH1	chr5	141848090	141883410
PCDH1_chr5_141848090_141883410	0/0	c0016	3714	1	0	1	0	0	0	copy fasta	PCDH1	chr5	141848090	141883410
PCDH1_chr5_141848090_141883410	0/0	c0017	3714	1	0	0	1	0	0	copy fasta	PCDH1	chr5	141848090	141883410
PCDH1_chr5_141848090_141883410	0/0	c0018	3714	1	0	1	0	0	0	copy fasta	PCDH1	chr5	141848090	141883410
PCDH1_chr5_141848090_141883410	0/0	c0019	3714	1	1	0	0	0	0	copy fasta	PCDH1	chr5	141848090	141883410
PCDH1_chr5_141848090_141883410	0/0	c0020	3714	1	0	0	0	0	1	copy fasta	PCDH1	chr5	141848090	141883410
PCDH1_chr5_141848090_141883410	0/0	c0021	3714	1	1	0	0	0	0	copy fasta	PCDH1	chr5	141848090	141883410
PCDH1_chr5_141848090_141883410	0/0	c0022	3714	1	1	0	0	0	0	copy fasta	PCDH1	chr5	141848090	141883410
PCDH1_chr5_141848090_141883410	0/0	c0023	3714	1	0	1	0	0	0	copy fasta	PCDH1	chr5	141848090	141883410
PCDH20_chr13_61404685_61420849	0/0	c0001	2856	291	49	58	144	10	30	copy fasta	PCDH20	chr13	61404685	61420849
PCDH20_chr13_61404685_61420849	1/1	c0002	2856	71	23	13	22	7	4	copy fasta	PCDH20	chr13	61404685	61420849
PCDH20_chr13_61404685_61420849	0/0	c0003	2856	67	7	4	43	1	12	copy fasta	PCDH20	chr13	61404685	61420849
PCDH20_chr13_61404685_61420849	0/0	c0004	2856	15	11	0	4	0	0	copy fasta	PCDH20	chr13	61404685	61420849
PCDH20_chr13_61404685_61420849	0/0	c0005	2856	6	6	0	0	0	0	copy fasta	PCDH20	chr13	61404685	61420849
PCDH20_chr13_61404685_61420849	0/0	c0006	2856	2	0	0	2	0	0	copy fasta	PCDH20	chr13	61404685	61420849
PCDH20_chr13_61404685_61420849	0/0	c0007	2856	1	0	0	1	0	0	copy fasta	PCDH20	chr13	61404685	61420849
PCDH20_chr13_61404685_61420849	0/0	c0008	2856	1	0	0	1	0	0	copy fasta	PCDH20	chr13	61404685	61420849
PCDH20_chr13_61404685_61420849	0/0	c0009	2856	1	0	0	1	0	0	copy fasta	PCDH20	chr13	61404685	61420849
PCDH20_chr13_61404685_61420849	0/0	c0010	2856	1	0	1	0	0	0	copy fasta	PCDH20	chr13	61404685	61420849
PCDH20_chr13_61404685_61420849	0/0	c0011	2856	1	0	0	1	0	0	copy fasta	PCDH20	chr13	61404685	61420849
PCDH20_chr13_61404685_61420849	0/0	c0012	2856	1	0	0	1	0	0	copy fasta	PCDH20	chr13	61404685	61420849
PCDH7_chr4_30715369_31151800	0/0	c0001	3768	137	32	22	60	2	21	copy fasta	PCDH7	chr4	30715369	31151800
PCDH7_chr4_30715369_31151800	0/0	c0002	3768	45	1	5	32	2	5	copy fasta	PCDH7	chr4	30715369	31151800
PCDH7_chr4_30715369_31151800	0/0	c0003	3768	5	5	0	0	0	0	copy fasta	PCDH7	chr4	30715369	31151800
PCDH7_chr4_30715369_31151800	0/0	c0004	3768	4	4	0	0	0	0	copy fasta	PCDH7	chr4	30715369	31151800
PCDH7_chr4_30715369_31151800	0/0	c0005	3768	4	4	0	0	0	0	copy fasta	PCDH7	chr4	30715369	31151800
PCDH7_chr4_30715369_31151800	0/0	c0006	3768	3	3	0	0	0	0	copy fasta	PCDH7	chr4	30715369	31151800
PCDH7_chr4_30715369_31151800	0/0	c0007	3768	3	3	0	0	0	0	copy fasta	PCDH7	chr4	30715369	31151800
PCDH7_chr4_30715369_31151800	0/0	c0008	3768	2	2	0	0	0	0	copy fasta	PCDH7	chr4	30715369	31151800
PCDH7_chr4_30715369_31151800	0/0	c0009	3768	1	0	1	0	0	0	copy fasta	PCDH7	chr4	30715369	31151800
PCDH7_chr4_30715369_31151800	0/0	c0010	3768	1	1	0	0	0	0	copy fasta	PCDH7	chr4	30715369	31151800
PCDH7_chr4_30715369_31151800	0/0	c0011	3768	1	1	0	0	0	0	copy fasta	PCDH7	chr4	30715369	31151800
PCDH7_chr4_30715369_31151800	0/0	c0012	3768	1	1	0	0	0	0	copy fasta	PCDH7	chr4	30715369	31151800
PCDH7_chr4_30715369_31151800	0/0	c0013	3768	1	1	0	0	0	0	copy fasta	PCDH7	chr4	30715369	31151800
PCDH7_chr4_30715369_31151800	0/0	c0014	3768	1	1	0	0	0	0	copy fasta	PCDH7	chr4	30715369	31151800
PCDH7_chr4_30715369_31151800	0/0	c0015	3768	1	0	0	1	0	0	copy fasta	PCDH7	chr4	30715369	31151800
PCDH7_chr4_30715369_31151800	0/0	c0016	3768	1	1	0	0	0	0	copy fasta	PCDH7	chr4	30715369	31151800
PCDH7_chr4_30715369_31151800	0/0	c0017	3768	1	0	0	1	0	0	copy fasta	PCDH7	chr4	30715369	31151800
PCDH7_chr4_30715369_31151800	0/0	c0018	3768	1	0	0	1	0	0	copy fasta	PCDH7	chr4	30715369	31151800
PCDH7_chr4_30715369_31151800	0/0	c0019	3768	1	0	0	1	0	0	copy fasta	PCDH7	chr4	30715369	31151800
PCDH8_chr13_52837889_52853640	1/1	c0001	3213	246	61	38	105	11	29	copy fasta	PCDH8	chr13	52837889	52853640
PCDH8_chr13_52837889_52853640	0/0	c0002	3213	133	12	23	77	6	15	copy fasta	PCDH8	chr13	52837889	52853640
PCDH8_chr13_52837889_52853640	0/0	c0003	3213	22	8	11	2	0	1	copy fasta	PCDH8	chr13	52837889	52853640
PCDH8_chr13_52837889_52853640	0/0	c0004	3213	5	0	4	1	0	0	copy fasta	PCDH8	chr13	52837889	52853640
PCDH8_chr13_52837889_52853640	0/0	c0005	3213	2	0	2	0	0	0	copy fasta	PCDH8	chr13	52837889	52853640
PCDH8_chr13_52837889_52853640	0/0	c0006	3213	2	2	0	0	0	0	copy fasta	PCDH8	chr13	52837889	52853640
PCDH8_chr13_52837889_52853640	0/0	c0007	3213	2	2	0	0	0	0	copy fasta	PCDH8	chr13	52837889	52853640
PCDH8_chr13_52837889_52853640	0/0	c0008	3213	2	2	0	0	0	0	copy fasta	PCDH8	chr13	52837889	52853640
PCDH8_chr13_52837889_52853640	0/0	c0009	3213	2	0	1	0	1	0	copy fasta	PCDH8	chr13	52837889	52853640
PCDH8_chr13_52837889_52853640	0/0	c0010	3213	2	0	0	2	0	0	copy fasta	PCDH8	chr13	52837889	52853640