JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PCDH8_chr13_52837889_52853640	0/0	c0011	3213	2	2	0	0	0	0	copy fasta	PCDH8	chr13	52837889	52853640
PCDH8_chr13_52837889_52853640	0/0	c0012	3213	1	1	0	0	0	0	copy fasta	PCDH8	chr13	52837889	52853640
PCDH8_chr13_52837889_52853640	0/0	c0013	3213	1	0	0	0	0	1	copy fasta	PCDH8	chr13	52837889	52853640
PCDH8_chr13_52837889_52853640	0/0	c0014	3213	1	0	0	1	0	0	copy fasta	PCDH8	chr13	52837889	52853640
PCDH8_chr13_52837889_52853640	0/0	c0015	3213	1	1	0	0	0	0	copy fasta	PCDH8	chr13	52837889	52853640
PCDH8_chr13_52837889_52853640	0/0	c0016	3213	1	0	1	0	0	0	copy fasta	PCDH8	chr13	52837889	52853640
PCDH8_chr13_52837889_52853640	0/0	c0017	3213	1	1	0	0	0	0	copy fasta	PCDH8	chr13	52837889	52853640
PCDH8_chr13_52837889_52853640	0/0	c0018	3213	1	0	0	1	0	0	copy fasta	PCDH8	chr13	52837889	52853640
PCDH8_chr13_52837889_52853640	0/0	c0019	3213	1	0	0	1	0	0	copy fasta	PCDH8	chr13	52837889	52853640
PCDH9_chr13_66297834_67235336	0/0	c0001	3714	31	18	6	4	0	3	copy fasta	PCDH9	chr13	66297834	67235336
PCDH9_chr13_66297834_67235336	0/0	c0002	3714	16	3	5	4	0	4	copy fasta	PCDH9	chr13	66297834	67235336
PCDH9_chr13_66297834_67235336	0/0	c0003	3714	13	5	4	1	2	1	copy fasta	PCDH9	chr13	66297834	67235336
PCDH9_chr13_66297834_67235336	0/0	c0004	3714	4	4	0	0	0	0	copy fasta	PCDH9	chr13	66297834	67235336
PCDH9_chr13_66297834_67235336	0/0	c0005	3714	3	3	0	0	0	0	copy fasta	PCDH9	chr13	66297834	67235336
PCDH9_chr13_66297834_67235336	0/0	c0006	3714	2	1	1	0	0	0	copy fasta	PCDH9	chr13	66297834	67235336
PCDH9_chr13_66297834_67235336	0/0	c0007	3714	2	0	2	0	0	0	copy fasta	PCDH9	chr13	66297834	67235336
PCDH9_chr13_66297834_67235336	0/0	c0008	3714	1	1	0	0	0	0	copy fasta	PCDH9	chr13	66297834	67235336
PCDH9_chr13_66297834_67235336	0/0	c0009	3714	1	1	0	0	0	0	copy fasta	PCDH9	chr13	66297834	67235336
PCDH9_chr13_66297834_67235336	0/0	c0010	3714	1	1	0	0	0	0	copy fasta	PCDH9	chr13	66297834	67235336
PCDH9_chr13_66297834_67235336	0/0	c0011	3714	1	1	0	0	0	0	copy fasta	PCDH9	chr13	66297834	67235336
PCDH9_chr13_66297834_67235336	0/0	c0012	3714	1	1	0	0	0	0	copy fasta	PCDH9	chr13	66297834	67235336
PCDH9_chr13_66297834_67235336	0/0	c0013	3714	1	1	0	0	0	0	copy fasta	PCDH9	chr13	66297834	67235336
PCDH9_chr13_66297834_67235336	0/0	c0014	3714	1	0	0	1	0	0	copy fasta	PCDH9	chr13	66297834	67235336
PCDH9_chr13_66297834_67235336	0/0	c0015	3714	1	1	0	0	0	0	copy fasta	PCDH9	chr13	66297834	67235336
PCDH9_chr13_66297834_67235336	0/0	c0016	3714	1	1	0	0	0	0	copy fasta	PCDH9	chr13	66297834	67235336
PCDHA10_chr5_140850897_141017347	1/1	c0001	2847	93	14	18	43	2	14	copy fasta	PCDHA10	chr5	140850897	141017347
PCDHA10_chr5_140850897_141017347	0/0	c0002	2847	90	11	16	46	4	13	copy fasta	PCDHA10	chr5	140850897	141017347
PCDHA10_chr5_140850897_141017347	0/0	c0003	2847	17	11	4	1	1	0	copy fasta	PCDHA10	chr5	140850897	141017347
PCDHA10_chr5_140850897_141017347	0/0	c0004	2847	8	7	1	0	0	0	copy fasta	PCDHA10	chr5	140850897	141017347
PCDHA10_chr5_140850897_141017347	0/0	c0005	2847	7	6	1	0	0	0	copy fasta	PCDHA10	chr5	140850897	141017347
PCDHA10_chr5_140850897_141017347	0/0	c0006	2847	5	1	4	0	0	0	copy fasta	PCDHA10	chr5	140850897	141017347
PCDHA10_chr5_140850897_141017347	0/0	c0007	2847	5	5	0	0	0	0	copy fasta	PCDHA10	chr5	140850897	141017347
PCDHA10_chr5_140850897_141017347	0/0	c0008	2847	5	4	0	1	0	0	copy fasta	PCDHA10	chr5	140850897	141017347
PCDHA10_chr5_140850897_141017347	0/0	c0009	2847	3	2	1	0	0	0	copy fasta	PCDHA10	chr5	140850897	141017347
PCDHA10_chr5_140850897_141017347	0/0	c0010	2847	3	0	0	3	0	0	copy fasta	PCDHA10	chr5	140850897	141017347
PCDHA10_chr5_140850897_141017347	0/0	c0011	2847	3	3	0	0	0	0	copy fasta	PCDHA10	chr5	140850897	141017347
PCDHA10_chr5_140850897_141017347	0/0	c0012	2847	2	2	0	0	0	0	copy fasta	PCDHA10	chr5	140850897	141017347
PCDHA10_chr5_140850897_141017347	0/0	c0013	2847	2	2	0	0	0	0	copy fasta	PCDHA10	chr5	140850897	141017347
PCDHA10_chr5_140850897_141017347	0/0	c0014	2847	1	1	0	0	0	0	copy fasta	PCDHA10	chr5	140850897	141017347
PCDHA10_chr5_140850897_141017347	0/0	c0015	2847	1	1	0	0	0	0	copy fasta	PCDHA10	chr5	140850897	141017347
PCDHA10_chr5_140850897_141017347	0/0	c0016	2847	1	1	0	0	0	0	copy fasta	PCDHA10	chr5	140850897	141017347
PCDHA10_chr5_140850897_141017347	0/0	c0017	2847	1	0	1	0	0	0	copy fasta	PCDHA10	chr5	140850897	141017347
PCDHA10_chr5_140850897_141017347	0/0	c0018	2847	1	1	0	0	0	0	copy fasta	PCDHA10	chr5	140850897	141017347
PCDHA10_chr5_140850897_141017347	0/0	c0019	2847	1	0	0	0	0	1	copy fasta	PCDHA10	chr5	140850897	141017347
PCDHA10_chr5_140850897_141017347	0/0	c0020	2847	1	0	0	1	0	0	copy fasta	PCDHA10	chr5	140850897	141017347
PCDHA10_chr5_140850897_141017347	0/0	c0021	2847	1	0	0	1	0	0	copy fasta	PCDHA10	chr5	140850897	141017347
PCDHA10_chr5_140850897_141017347	0/0	c0022	2847	1	0	0	0	0	1	copy fasta	PCDHA10	chr5	140850897	141017347
PCDHA10_chr5_140850897_141017347	0/0	c0023	2847	1	0	1	0	0	0	copy fasta	PCDHA10	chr5	140850897	141017347
PCDHA10_chr5_140850897_141017347	0/0	c0024	2847	1	0	0	0	0	1	copy fasta	PCDHA10	chr5	140850897	141017347
PCDHA10_chr5_140850897_141017347	0/0	c0025	2847	1	1	0	0	0	0	copy fasta	PCDHA10	chr5	140850897	141017347