JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PCDHA10_chr5_140850897_141017347	0/0	c0026	2847	1	0	0	1	0	0	copy fasta	PCDHA10	chr5	140850897	141017347
PCDHA10_chr5_140850897_141017347	0/0	c0027	2847	1	1	0	0	0	0	copy fasta	PCDHA10	chr5	140850897	141017347
PCDHA10_chr5_140850897_141017347	0/0	c0028	2847	1	0	0	1	0	0	copy fasta	PCDHA10	chr5	140850897	141017347
PCDHA10_chr5_140850897_141017347	0/0	c0029	2847	1	0	0	0	1	0	copy fasta	PCDHA10	chr5	140850897	141017347
PCDHA10_chr5_140850897_141017347	0/0	c0030	2847	1	0	1	0	0	0	copy fasta	PCDHA10	chr5	140850897	141017347
PCDHA11_chr5_140863957_141017347	1/1	c0001	2850	122	46	22	36	2	14	copy fasta	PCDHA11	chr5	140863957	141017347
PCDHA11_chr5_140863957_141017347	0/0	c0002	2850	105	23	16	48	4	14	copy fasta	PCDHA11	chr5	140863957	141017347
PCDHA11_chr5_140863957_141017347	0/0	c0003	2850	10	0	1	9	0	0	copy fasta	PCDHA11	chr5	140863957	141017347
PCDHA11_chr5_140863957_141017347	0/0	c0004	2850	5	0	4	0	1	0	copy fasta	PCDHA11	chr5	140863957	141017347
PCDHA11_chr5_140863957_141017347	0/0	c0005	2850	4	4	0	0	0	0	copy fasta	PCDHA11	chr5	140863957	141017347
PCDHA11_chr5_140863957_141017347	0/0	c0006	2850	2	2	0	0	0	0	copy fasta	PCDHA11	chr5	140863957	141017347
PCDHA11_chr5_140863957_141017347	0/0	c0007	2850	1	0	0	0	0	1	copy fasta	PCDHA11	chr5	140863957	141017347
PCDHA11_chr5_140863957_141017347	0/0	c0008	2850	1	0	0	0	0	1	copy fasta	PCDHA11	chr5	140863957	141017347
PCDHA11_chr5_140863957_141017347	0/0	c0009	2850	1	0	1	0	0	0	copy fasta	PCDHA11	chr5	140863957	141017347
PCDHA11_chr5_140863957_141017347	0/0	c0010	2850	1	0	0	0	0	1	copy fasta	PCDHA11	chr5	140863957	141017347
PCDHA11_chr5_140863957_141017347	0/0	c0011	2850	1	1	0	0	0	0	copy fasta	PCDHA11	chr5	140863957	141017347
PCDHA11_chr5_140863957_141017347	0/0	c0012	2850	1	0	0	1	0	0	copy fasta	PCDHA11	chr5	140863957	141017347
PCDHA11_chr5_140863957_141017347	0/0	c0013	2850	1	0	0	0	0	1	copy fasta	PCDHA11	chr5	140863957	141017347
PCDHA11_chr5_140863957_141017347	0/0	c0014	2850	1	0	1	0	0	0	copy fasta	PCDHA11	chr5	140863957	141017347
PCDHA11_chr5_140863957_141017347	0/0	c0015	2850	1	1	0	0	0	0	copy fasta	PCDHA11	chr5	140863957	141017347
PCDHA11_chr5_140863957_141017347	0/0	c0016	2850	1	0	0	0	1	0	copy fasta	PCDHA11	chr5	140863957	141017347
PCDHA11_chr5_140863957_141017347	0/0	c0017	2850	1	1	0	0	0	0	copy fasta	PCDHA11	chr5	140863957	141017347
PCDHA11_chr5_140863957_141017347	0/0	c0018	2850	1	0	1	0	0	0	copy fasta	PCDHA11	chr5	140863957	141017347
PCDHA12_chr5_140870308_141017347	1/1	c0001	2826	128	41	22	49	3	11	copy fasta	PCDHA12	chr5	140870308	141017347
PCDHA12_chr5_140870308_141017347	0/0	c0002	2826	86	19	11	39	4	13	copy fasta	PCDHA12	chr5	140870308	141017347
PCDHA12_chr5_140870308_141017347	0/0	c0003	2826	10	1	2	7	0	0	copy fasta	PCDHA12	chr5	140870308	141017347
PCDHA12_chr5_140870308_141017347	0/0	c0004	2826	5	5	0	0	0	0	copy fasta	PCDHA12	chr5	140870308	141017347
PCDHA12_chr5_140870308_141017347	0/0	c0005	2826	5	1	4	0	0	0	copy fasta	PCDHA12	chr5	140870308	141017347
PCDHA12_chr5_140870308_141017347	0/0	c0006	2826	3	3	0	0	0	0	copy fasta	PCDHA12	chr5	140870308	141017347
PCDHA12_chr5_140870308_141017347	0/0	c0007	2826	2	1	1	0	0	0	copy fasta	PCDHA12	chr5	140870308	141017347
PCDHA12_chr5_140870308_141017347	0/0	c0008	2826	2	0	0	0	0	2	copy fasta	PCDHA12	chr5	140870308	141017347
PCDHA12_chr5_140870308_141017347	0/0	c0009	2826	2	2	0	0	0	0	copy fasta	PCDHA12	chr5	140870308	141017347
PCDHA12_chr5_140870308_141017347	0/0	c0010	2826	1	0	1	0	0	0	copy fasta	PCDHA12	chr5	140870308	141017347
PCDHA12_chr5_140870308_141017347	0/0	c0011	2813	1	0	0	1	0	0	copy fasta	PCDHA12	chr5	140870308	141017347
PCDHA12_chr5_140870308_141017347	0/0	c0012	2826	1	0	1	0	0	0	copy fasta	PCDHA12	chr5	140870308	141017347
PCDHA12_chr5_140870308_141017347	0/0	c0013	2826	1	0	1	0	0	0	copy fasta	PCDHA12	chr5	140870308	141017347
PCDHA12_chr5_140870308_141017347	0/0	c0014	2826	1	1	0	0	0	0	copy fasta	PCDHA12	chr5	140870308	141017347
PCDHA12_chr5_140870308_141017347	0/0	c0015	2826	1	0	0	0	0	1	copy fasta	PCDHA12	chr5	140870308	141017347
PCDHA12_chr5_140870308_141017347	0/0	c0016	2826	1	0	1	0	0	0	copy fasta	PCDHA12	chr5	140870308	141017347
PCDHA12_chr5_140870308_141017347	0/0	c0017	2826	1	0	0	0	0	1	copy fasta	PCDHA12	chr5	140870308	141017347
PCDHA12_chr5_140870308_141017347	0/0	c0018	2826	1	0	1	0	0	0	copy fasta	PCDHA12	chr5	140870308	141017347
PCDHA12_chr5_140870308_141017347	0/0	c0019	2826	1	1	0	0	0	0	copy fasta	PCDHA12	chr5	140870308	141017347
PCDHA12_chr5_140870308_141017347	0/0	c0020	2826	1	0	1	0	0	0	copy fasta	PCDHA12	chr5	140870308	141017347
PCDHA12_chr5_140870308_141017347	0/0	c0021	2826	1	1	0	0	0	0	copy fasta	PCDHA12	chr5	140870308	141017347
PCDHA12_chr5_140870308_141017347	0/0	c0022	2826	1	0	0	0	0	1	copy fasta	PCDHA12	chr5	140870308	141017347
PCDHA12_chr5_140870308_141017347	0/0	c0023	2826	1	0	0	0	0	1	copy fasta	PCDHA12	chr5	140870308	141017347
PCDHA12_chr5_140870308_141017347	0/0	c0024	2826	1	1	0	0	0	0	copy fasta	PCDHA12	chr5	140870308	141017347
PCDHA12_chr5_140870308_141017347	0/0	c0025	2826	1	1	0	0	0	0	copy fasta	PCDHA12	chr5	140870308	141017347
PCDHA12_chr5_140870308_141017347	0/0	c0026	2826	1	0	0	0	1	0	copy fasta	PCDHA12	chr5	140870308	141017347
PCDHA13_chr5_140877124_141017347	0/0	c0001	2853	122	36	21	48	5	12	copy fasta	PCDHA13	chr5	140877124	141017347