JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PCDHA13_chr5_140877124_141017347	1/1	c0002	2853	94	25	14	40	2	11	copy fasta	PCDHA13	chr5	140877124	141017347
PCDHA13_chr5_140877124_141017347	0/0	c0003	2853	19	7	8	3	0	1	copy fasta	PCDHA13	chr5	140877124	141017347
PCDHA13_chr5_140877124_141017347	0/0	c0004	2853	3	3	0	0	0	0	copy fasta	PCDHA13	chr5	140877124	141017347
PCDHA13_chr5_140877124_141017347	0/0	c0005	2853	3	3	0	0	0	0	copy fasta	PCDHA13	chr5	140877124	141017347
PCDHA13_chr5_140877124_141017347	0/0	c0006	2853	2	2	0	0	0	0	copy fasta	PCDHA13	chr5	140877124	141017347
PCDHA13_chr5_140877124_141017347	0/0	c0007	2853	1	0	0	0	0	1	copy fasta	PCDHA13	chr5	140877124	141017347
PCDHA13_chr5_140877124_141017347	0/0	c0008	2853	1	0	1	0	0	0	copy fasta	PCDHA13	chr5	140877124	141017347
PCDHA13_chr5_140877124_141017347	0/0	c0009	2853	1	0	0	0	0	1	copy fasta	PCDHA13	chr5	140877124	141017347
PCDHA13_chr5_140877124_141017347	0/0	c0010	2853	1	0	1	0	0	0	copy fasta	PCDHA13	chr5	140877124	141017347
PCDHA13_chr5_140877124_141017347	0/0	c0011	2853	1	0	0	0	0	1	copy fasta	PCDHA13	chr5	140877124	141017347
PCDHA13_chr5_140877124_141017347	0/0	c0012	2853	1	0	0	1	0	0	copy fasta	PCDHA13	chr5	140877124	141017347
PCDHA13_chr5_140877124_141017347	0/0	c0013	2853	1	1	0	0	0	0	copy fasta	PCDHA13	chr5	140877124	141017347
PCDHA13_chr5_140877124_141017347	0/0	c0014	2853	1	0	1	0	0	0	copy fasta	PCDHA13	chr5	140877124	141017347
PCDHA13_chr5_140877124_141017347	0/0	c0015	2853	1	0	0	0	0	1	copy fasta	PCDHA13	chr5	140877124	141017347
PCDHA13_chr5_140877124_141017347	0/0	c0016	2853	1	0	0	1	0	0	copy fasta	PCDHA13	chr5	140877124	141017347
PCDHA13_chr5_140877124_141017347	0/0	c0017	2853	1	1	0	0	0	0	copy fasta	PCDHA13	chr5	140877124	141017347
PCDHA13_chr5_140877124_141017347	0/0	c0018	2853	1	0	0	1	0	0	copy fasta	PCDHA13	chr5	140877124	141017347
PCDHA13_chr5_140877124_141017347	0/0	c0019	2853	1	0	0	0	0	1	copy fasta	PCDHA13	chr5	140877124	141017347
PCDHA13_chr5_140877124_141017347	0/0	c0020	2853	1	1	0	0	0	0	copy fasta	PCDHA13	chr5	140877124	141017347
PCDHA13_chr5_140877124_141017347	0/0	c0021	2853	1	0	0	0	0	1	copy fasta	PCDHA13	chr5	140877124	141017347
PCDHA13_chr5_140877124_141017347	0/0	c0022	2853	1	1	0	0	0	0	copy fasta	PCDHA13	chr5	140877124	141017347
PCDHA13_chr5_140877124_141017347	0/0	c0023	2853	1	0	0	0	1	0	copy fasta	PCDHA13	chr5	140877124	141017347
PCDHA1_chr5_140781140_141017347	0/0	c0001	2853	88	28	22	28	2	8	copy fasta	PCDHA1	chr5	140781140	141017347
PCDHA1_chr5_140781140_141017347	1/1	c0002	2853	86	32	12	28	3	9	copy fasta	PCDHA1	chr5	140781140	141017347
PCDHA1_chr5_140781140_141017347	0/0	c0003	2853	5	5	0	0	0	0	copy fasta	PCDHA1	chr5	140781140	141017347
PCDHA1_chr5_140781140_141017347	0/0	c0004	2853	4	3	1	0	0	0	copy fasta	PCDHA1	chr5	140781140	141017347
PCDHA1_chr5_140781140_141017347	0/0	c0005	2853	2	2	0	0	0	0	copy fasta	PCDHA1	chr5	140781140	141017347
PCDHA1_chr5_140781140_141017347	0/0	c0006	2853	2	0	0	2	0	0	copy fasta	PCDHA1	chr5	140781140	141017347
PCDHA1_chr5_140781140_141017347	0/0	c0007	2853	1	1	0	0	0	0	copy fasta	PCDHA1	chr5	140781140	141017347
PCDHA1_chr5_140781140_141017347	0/0	c0008	2853	1	1	0	0	0	0	copy fasta	PCDHA1	chr5	140781140	141017347
PCDHA1_chr5_140781140_141017347	0/0	c0009	2853	1	0	0	0	0	1	copy fasta	PCDHA1	chr5	140781140	141017347
PCDHA1_chr5_140781140_141017347	0/0	c0010	2853	1	0	0	0	0	1	copy fasta	PCDHA1	chr5	140781140	141017347
PCDHA1_chr5_140781140_141017347	0/0	c0011	2853	1	0	1	0	0	0	copy fasta	PCDHA1	chr5	140781140	141017347
PCDHA1_chr5_140781140_141017347	0/0	c0012	2853	1	0	0	1	0	0	copy fasta	PCDHA1	chr5	140781140	141017347
PCDHA1_chr5_140781140_141017347	0/0	c0013	2853	1	1	0	0	0	0	copy fasta	PCDHA1	chr5	140781140	141017347
PCDHA1_chr5_140781140_141017347	0/0	c0014	2853	1	0	0	1	0	0	copy fasta	PCDHA1	chr5	140781140	141017347
PCDHA1_chr5_140781140_141017347	0/0	c0015	2853	1	0	0	1	0	0	copy fasta	PCDHA1	chr5	140781140	141017347
PCDHA1_chr5_140781140_141017347	0/0	c0016	2853	1	0	0	0	0	1	copy fasta	PCDHA1	chr5	140781140	141017347
PCDHA1_chr5_140781140_141017347	0/0	c0017	2853	1	0	0	1	0	0	copy fasta	PCDHA1	chr5	140781140	141017347
PCDHA1_chr5_140781140_141017347	0/0	c0018	2853	1	0	0	0	1	0	copy fasta	PCDHA1	chr5	140781140	141017347
PCDHA1_chr5_140781140_141017347	0/0	c0019	2853	1	1	0	0	0	0	copy fasta	PCDHA1	chr5	140781140	141017347
PCDHA2_chr5_140789852_141017347	0/0	c0001	2847	94	30	22	31	3	8	copy fasta	PCDHA2	chr5	140789852	141017347
PCDHA2_chr5_140789852_141017347	1/1	c0002	2847	74	20	9	31	3	9	copy fasta	PCDHA2	chr5	140789852	141017347
PCDHA2_chr5_140789852_141017347	0/0	c0003	2847	9	8	1	0	0	0	copy fasta	PCDHA2	chr5	140789852	141017347
PCDHA2_chr5_140789852_141017347	0/0	c0004	2847	6	6	0	0	0	0	copy fasta	PCDHA2	chr5	140789852	141017347
PCDHA2_chr5_140789852_141017347	0/0	c0005	2847	3	3	0	0	0	0	copy fasta	PCDHA2	chr5	140789852	141017347
PCDHA2_chr5_140789852_141017347	0/0	c0006	2847	2	2	0	0	0	0	copy fasta	PCDHA2	chr5	140789852	141017347
PCDHA2_chr5_140789852_141017347	0/0	c0007	2847	2	2	0	0	0	0	copy fasta	PCDHA2	chr5	140789852	141017347
PCDHA2_chr5_140789852_141017347	0/0	c0008	2847	2	0	2	0	0	0	copy fasta	PCDHA2	chr5	140789852	141017347
PCDHA2_chr5_140789852_141017347	0/0	c0009	2847	1	0	1	0	0	0	copy fasta	PCDHA2	chr5	140789852	141017347