JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ARHGAP8_chr22_44747575_44867784	0/0	c0079	1302	1	0	0	1	0	0	copy fasta	ARHGAP8	chr22	44747575	44867784
ARHGAP8_chr22_44747575_44867784	0/0	c0080	1302	1	0	0	0	0	1	copy fasta	ARHGAP8	chr22	44747575	44867784
ARHGAP8_chr22_44747575_44867784	0/0	c0081	1302	1	0	0	1	0	0	copy fasta	ARHGAP8	chr22	44747575	44867784
ARHGAP9_chr12_57467269_57484866	1/0	c0001	2196	166	46	35	64	2	18	copy fasta	ARHGAP9	chr12	57467269	57484866
ARHGAP9_chr12_57467269_57484866	0/0	c0002	2196	128	11	26	67	5	19	copy fasta	ARHGAP9	chr12	57467269	57484866
ARHGAP9_chr12_57467269_57484866	0/0	c0003	2196	17	0	4	9	2	2	copy fasta	ARHGAP9	chr12	57467269	57484866
ARHGAP9_chr12_57467269_57484866	0/0	c0004	2196	14	0	0	13	0	1	copy fasta	ARHGAP9	chr12	57467269	57484866
ARHGAP9_chr12_57467269_57484866	0/0	c0005	2196	13	11	1	0	0	1	copy fasta	ARHGAP9	chr12	57467269	57484866
ARHGAP9_chr12_57467269_57484866	0/0	c0006	2196	12	12	0	0	0	0	copy fasta	ARHGAP9	chr12	57467269	57484866
ARHGAP9_chr12_57467269_57484866	0/0	c0007	2196	12	0	0	12	0	0	copy fasta	ARHGAP9	chr12	57467269	57484866
ARHGAP9_chr12_57467269_57484866	0/0	c0008	2196	11	9	2	0	0	0	copy fasta	ARHGAP9	chr12	57467269	57484866
ARHGAP9_chr12_57467269_57484866	0/0	c0009	2196	6	5	1	0	0	0	copy fasta	ARHGAP9	chr12	57467269	57484866
ARHGAP9_chr12_57467269_57484866	0/0	c0010	2196	5	0	0	5	0	0	copy fasta	ARHGAP9	chr12	57467269	57484866
ARHGAP9_chr12_57467269_57484866	0/0	c0011	2196	4	0	0	4	0	0	copy fasta	ARHGAP9	chr12	57467269	57484866
ARHGAP9_chr12_57467269_57484866	0/0	c0012	2196	2	1	1	0	0	0	copy fasta	ARHGAP9	chr12	57467269	57484866
ARHGAP9_chr12_57467269_57484866	0/0	c0013	2196	2	0	0	2	0	0	copy fasta	ARHGAP9	chr12	57467269	57484866
ARHGAP9_chr12_57467269_57484866	0/0	c0014	2196	1	1	0	0	0	0	copy fasta	ARHGAP9	chr12	57467269	57484866
ARHGAP9_chr12_57467269_57484866	0/0	c0015	2196	1	0	0	1	0	0	copy fasta	ARHGAP9	chr12	57467269	57484866
ARHGAP9_chr12_57467269_57484866	0/0	c0016	2196	1	0	0	1	0	0	copy fasta	ARHGAP9	chr12	57467269	57484866
ARHGAP9_chr12_57467269_57484866	0/0	c0017	2196	1	1	0	0	0	0	copy fasta	ARHGAP9	chr12	57467269	57484866
ARHGAP9_chr12_57467269_57484866	0/1	c0018	2196	1	0	0	0	0	0	copy fasta	ARHGAP9	chr12	57467269	57484866
ARHGAP9_chr12_57467269_57484866	0/0	c0019	2196	1	0	0	1	0	0	copy fasta	ARHGAP9	chr12	57467269	57484866
ARHGAP9_chr12_57467269_57484866	0/0	c0020	2196	1	0	0	1	0	0	copy fasta	ARHGAP9	chr12	57467269	57484866
ARHGAP9_chr12_57467269_57484866	0/0	c0021	2196	1	0	1	0	0	0	copy fasta	ARHGAP9	chr12	57467269	57484866
ARHGAP9_chr12_57467269_57484866	0/0	c0022	2196	1	0	1	0	0	0	copy fasta	ARHGAP9	chr12	57467269	57484866
ARHGAP9_chr12_57467269_57484866	0/0	c0023	2196	1	0	0	0	1	0	copy fasta	ARHGAP9	chr12	57467269	57484866
ARHGAP9_chr12_57467269_57484866	0/0	c0024	2196	1	0	0	1	0	0	copy fasta	ARHGAP9	chr12	57467269	57484866
ARHGAP9_chr12_57467269_57484866	0/0	c0025	2196	1	0	0	0	0	1	copy fasta	ARHGAP9	chr12	57467269	57484866
ARHGAP9_chr12_57467269_57484866	0/0	c0026	2196	1	1	0	0	0	0	copy fasta	ARHGAP9	chr12	57467269	57484866
ARHGAP9_chr12_57467269_57484866	0/0	c0027	2196	1	0	0	1	0	0	copy fasta	ARHGAP9	chr12	57467269	57484866
ARHGDIA_chr17_81862721_81876337	1/1	c0001	615	379	93	78	149	16	41	copy fasta	ARHGDIA	chr17	81862721	81876337
ARHGDIA_chr17_81862721_81876337	0/0	c0002	615	1	0	0	1	0	0	copy fasta	ARHGDIA	chr17	81862721	81876337
ARHGDIA_chr17_81862721_81876337	0/0	c0003	615	1	0	0	0	0	1	copy fasta	ARHGDIA	chr17	81862721	81876337
ARHGDIA_chr17_81862721_81876337	0/0	c0004	615	1	1	0	0	0	0	copy fasta	ARHGDIA	chr17	81862721	81876337
ARHGDIA_chr17_81862721_81876337	0/0	c0005	615	1	1	0	0	0	0	copy fasta	ARHGDIA	chr17	81862721	81876337
ARHGDIA_chr17_81862721_81876337	0/0	c0006	615	1	1	0	0	0	0	copy fasta	ARHGDIA	chr17	81862721	81876337
ARHGDIB_chr12_14937031_14966601	0/1	c0001	606	237	46	43	119	9	19	copy fasta	ARHGDIB	chr12	14937031	14966601
ARHGDIB_chr12_14937031_14966601	1/0	c0002	606	225	52	27	114	6	25	copy fasta	ARHGDIB	chr12	14937031	14966601
ARHGDIB_chr12_14937031_14966601	0/0	c0003	606	1	0	0	0	1	0	copy fasta	ARHGDIB	chr12	14937031	14966601
ARHGDIB_chr12_14937031_14966601	0/0	c0004	606	1	0	0	1	0	0	copy fasta	ARHGDIB	chr12	14937031	14966601
ARHGDIG_chr16_275591_288010	1/1	c0001	678	425	91	82	182	18	50	copy fasta	ARHGDIG	chr16	275591	288010
ARHGDIG_chr16_275591_288010	0/0	c0002	678	5	5	0	0	0	0	copy fasta	ARHGDIG	chr16	275591	288010
ARHGDIG_chr16_275591_288010	0/0	c0003	678	5	0	2	3	0	0	copy fasta	ARHGDIG	chr16	275591	288010
ARHGDIG_chr16_275591_288010	0/0	c0004	678	1	0	0	1	0	0	copy fasta	ARHGDIG	chr16	275591	288010
ARHGDIG_chr16_275591_288010	0/0	c0005	678	1	0	0	1	0	0	copy fasta	ARHGDIG	chr16	275591	288010
ARHGDIG_chr16_275591_288010	0/0	c0006	678	1	0	0	1	0	0	copy fasta	ARHGDIG	chr16	275591	288010
ARHGDIG_chr16_275591_288010	0/0	c0007	678	1	0	0	1	0	0	copy fasta	ARHGDIG	chr16	275591	288010
ARHGDIG_chr16_275591_288010	0/0	c0008	678	1	0	0	1	0	0	copy fasta	ARHGDIG	chr16	275591	288010
ARHGDIG_chr16_275591_288010	0/0	c0009	678	1	0	0	1	0	0	copy fasta	ARHGDIG	chr16	275591	288010
ARHGDIG_chr16_275591_288010	0/0	c0010	678	1	0	0	1	0	0	copy fasta	ARHGDIG	chr16	275591	288010