JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PCDHA2_chr5_140789852_141017347	0/0	c0010	2847	1	0	0	0	0	1	copy fasta	PCDHA2	chr5	140789852	141017347
PCDHA2_chr5_140789852_141017347	0/0	c0011	2847	1	0	0	0	0	1	copy fasta	PCDHA2	chr5	140789852	141017347
PCDHA2_chr5_140789852_141017347	0/0	c0012	2847	1	1	0	0	0	0	copy fasta	PCDHA2	chr5	140789852	141017347
PCDHA2_chr5_140789852_141017347	0/0	c0013	2847	1	1	0	0	0	0	copy fasta	PCDHA2	chr5	140789852	141017347
PCDHA2_chr5_140789852_141017347	0/0	c0014	2847	1	0	0	1	0	0	copy fasta	PCDHA2	chr5	140789852	141017347
PCDHA2_chr5_140789852_141017347	0/0	c0015	2847	1	0	1	0	0	0	copy fasta	PCDHA2	chr5	140789852	141017347
PCDHA2_chr5_140789852_141017347	0/0	c0016	2847	1	1	0	0	0	0	copy fasta	PCDHA2	chr5	140789852	141017347
PCDHA2_chr5_140789852_141017347	0/0	c0017	2847	1	0	0	1	0	0	copy fasta	PCDHA2	chr5	140789852	141017347
PCDHA2_chr5_140789852_141017347	0/0	c0018	2847	1	0	0	0	0	1	copy fasta	PCDHA2	chr5	140789852	141017347
PCDHA3_chr5_140796057_141017347	0/0	c0001	2853	101	31	23	31	3	13	copy fasta	PCDHA3	chr5	140796057	141017347
PCDHA3_chr5_140796057_141017347	1/1	c0002	2853	60	17	5	26	2	8	copy fasta	PCDHA3	chr5	140796057	141017347
PCDHA3_chr5_140796057_141017347	0/0	c0003	2853	15	6	3	4	1	1	copy fasta	PCDHA3	chr5	140796057	141017347
PCDHA3_chr5_140796057_141017347	0/0	c0004	2853	11	11	0	0	0	0	copy fasta	PCDHA3	chr5	140796057	141017347
PCDHA3_chr5_140796057_141017347	0/0	c0005	2853	8	7	1	0	0	0	copy fasta	PCDHA3	chr5	140796057	141017347
PCDHA3_chr5_140796057_141017347	0/0	c0006	2853	3	0	2	0	0	1	copy fasta	PCDHA3	chr5	140796057	141017347
PCDHA3_chr5_140796057_141017347	0/0	c0007	2853	2	2	0	0	0	0	copy fasta	PCDHA3	chr5	140796057	141017347
PCDHA3_chr5_140796057_141017347	0/0	c0008	2853	2	0	0	2	0	0	copy fasta	PCDHA3	chr5	140796057	141017347
PCDHA3_chr5_140796057_141017347	0/0	c0009	2853	1	1	0	0	0	0	copy fasta	PCDHA3	chr5	140796057	141017347
PCDHA3_chr5_140796057_141017347	0/0	c0010	2853	1	0	0	1	0	0	copy fasta	PCDHA3	chr5	140796057	141017347
PCDHA3_chr5_140796057_141017347	0/0	c0011	2853	1	0	1	0	0	0	copy fasta	PCDHA3	chr5	140796057	141017347
PCDHA3_chr5_140796057_141017347	0/0	c0012	2853	1	0	1	0	0	0	copy fasta	PCDHA3	chr5	140796057	141017347
PCDHA3_chr5_140796057_141017347	0/0	c0013	2853	1	1	0	0	0	0	copy fasta	PCDHA3	chr5	140796057	141017347
PCDHA3_chr5_140796057_141017347	0/0	c0014	2853	1	0	0	0	0	1	copy fasta	PCDHA3	chr5	140796057	141017347
PCDHA4_chr5_140802068_141017347	1/1	c0001	2844	82	22	10	35	3	10	copy fasta	PCDHA4	chr5	140802068	141017347
PCDHA4_chr5_140802068_141017347	0/0	c0002	2844	50	2	9	29	2	8	copy fasta	PCDHA4	chr5	140802068	141017347
PCDHA4_chr5_140802068_141017347	0/0	c0003	2844	30	19	8	2	0	1	copy fasta	PCDHA4	chr5	140802068	141017347
PCDHA4_chr5_140802068_141017347	0/0	c0004	2844	13	12	1	0	0	0	copy fasta	PCDHA4	chr5	140802068	141017347
PCDHA4_chr5_140802068_141017347	0/0	c0005	2844	5	4	1	0	0	0	copy fasta	PCDHA4	chr5	140802068	141017347
PCDHA4_chr5_140802068_141017347	0/0	c0006	2844	5	5	0	0	0	0	copy fasta	PCDHA4	chr5	140802068	141017347
PCDHA4_chr5_140802068_141017347	0/0	c0007	2844	4	3	1	0	0	0	copy fasta	PCDHA4	chr5	140802068	141017347
PCDHA4_chr5_140802068_141017347	0/0	c0008	2844	4	0	4	0	0	0	copy fasta	PCDHA4	chr5	140802068	141017347
PCDHA4_chr5_140802068_141017347	0/0	c0009	2844	4	4	0	0	0	0	copy fasta	PCDHA4	chr5	140802068	141017347
PCDHA4_chr5_140802068_141017347	0/0	c0010	2844	4	0	0	0	0	4	copy fasta	PCDHA4	chr5	140802068	141017347
PCDHA4_chr5_140802068_141017347	0/0	c0011	2844	2	2	0	0	0	0	copy fasta	PCDHA4	chr5	140802068	141017347
PCDHA4_chr5_140802068_141017347	0/0	c0012	2844	1	0	0	0	1	0	copy fasta	PCDHA4	chr5	140802068	141017347
PCDHA4_chr5_140802068_141017347	0/0	c0013	2844	1	1	0	0	0	0	copy fasta	PCDHA4	chr5	140802068	141017347
PCDHA4_chr5_140802068_141017347	0/0	c0014	2844	1	0	0	1	0	0	copy fasta	PCDHA4	chr5	140802068	141017347
PCDHA4_chr5_140802068_141017347	0/0	c0015	2844	1	0	0	1	0	0	copy fasta	PCDHA4	chr5	140802068	141017347
PCDHA4_chr5_140802068_141017347	0/0	c0016	2844	1	0	1	0	0	0	copy fasta	PCDHA4	chr5	140802068	141017347
PCDHA4_chr5_140802068_141017347	0/0	c0017	2844	1	0	1	0	0	0	copy fasta	PCDHA4	chr5	140802068	141017347
PCDHA4_chr5_140802068_141017347	0/0	c0018	2844	1	1	0	0	0	0	copy fasta	PCDHA4	chr5	140802068	141017347
PCDHA4_chr5_140802068_141017347	0/0	c0019	2844	1	1	0	0	0	0	copy fasta	PCDHA4	chr5	140802068	141017347
PCDHA4_chr5_140802068_141017347	0/0	c0020	2844	1	0	0	0	0	1	copy fasta	PCDHA4	chr5	140802068	141017347
PCDHA5_chr5_140816613_141017347	0/0	c0001	2811	97	25	22	34	3	13	copy fasta	PCDHA5	chr5	140816613	141017347
PCDHA5_chr5_140816613_141017347	1/1	c0002	2811	79	19	11	34	3	10	copy fasta	PCDHA5	chr5	140816613	141017347
PCDHA5_chr5_140816613_141017347	0/0	c0003	2811	10	9	1	0	0	0	copy fasta	PCDHA5	chr5	140816613	141017347
PCDHA5_chr5_140816613_141017347	0/0	c0004	2811	5	5	0	0	0	0	copy fasta	PCDHA5	chr5	140816613	141017347
PCDHA5_chr5_140816613_141017347	0/0	c0005	2811	4	4	0	0	0	0	copy fasta	PCDHA5	chr5	140816613	141017347
PCDHA5_chr5_140816613_141017347	0/0	c0006	2811	4	4	0	0	0	0	copy fasta	PCDHA5	chr5	140816613	141017347
PCDHA5_chr5_140816613_141017347	0/0	c0007	2811	4	3	1	0	0	0	copy fasta	PCDHA5	chr5	140816613	141017347