JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PCDHA5_chr5_140816613_141017347	0/0	c0008	2811	4	4	0	0	0	0	copy fasta	PCDHA5	chr5	140816613	141017347
PCDHA5_chr5_140816613_141017347	0/0	c0009	2811	2	2	0	0	0	0	copy fasta	PCDHA5	chr5	140816613	141017347
PCDHA5_chr5_140816613_141017347	0/0	c0010	2811	2	2	0	0	0	0	copy fasta	PCDHA5	chr5	140816613	141017347
PCDHA5_chr5_140816613_141017347	0/0	c0011	2811	2	0	0	2	0	0	copy fasta	PCDHA5	chr5	140816613	141017347
PCDHA5_chr5_140816613_141017347	0/0	c0012	2811	1	0	1	0	0	0	copy fasta	PCDHA5	chr5	140816613	141017347
PCDHA5_chr5_140816613_141017347	0/0	c0013	2811	1	0	0	1	0	0	copy fasta	PCDHA5	chr5	140816613	141017347
PCDHA5_chr5_140816613_141017347	0/0	c0014	2811	1	0	0	0	0	1	copy fasta	PCDHA5	chr5	140816613	141017347
PCDHA5_chr5_140816613_141017347	0/0	c0015	2811	1	0	1	0	0	0	copy fasta	PCDHA5	chr5	140816613	141017347
PCDHA5_chr5_140816613_141017347	0/0	c0016	2811	1	0	0	1	0	0	copy fasta	PCDHA5	chr5	140816613	141017347
PCDHA5_chr5_140816613_141017347	0/0	c0017	2811	1	0	1	0	0	0	copy fasta	PCDHA5	chr5	140816613	141017347
PCDHA5_chr5_140816613_141017347	0/0	c0018	2811	1	1	0	0	0	0	copy fasta	PCDHA5	chr5	140816613	141017347
PCDHA6_chr5_140822960_141017347	0/0	c0001	2853	94	23	20	34	3	14	copy fasta	PCDHA6	chr5	140822960	141017347
PCDHA6_chr5_140822960_141017347	1/1	c0002	2853	88	20	10	42	5	9	copy fasta	PCDHA6	chr5	140822960	141017347
PCDHA6_chr5_140822960_141017347	0/0	c0003	2853	12	10	2	0	0	0	copy fasta	PCDHA6	chr5	140822960	141017347
PCDHA6_chr5_140822960_141017347	0/0	c0004	2853	11	10	1	0	0	0	copy fasta	PCDHA6	chr5	140822960	141017347
PCDHA6_chr5_140822960_141017347	0/0	c0005	2853	6	6	0	0	0	0	copy fasta	PCDHA6	chr5	140822960	141017347
PCDHA6_chr5_140822960_141017347	0/0	c0006	2853	4	3	1	0	0	0	copy fasta	PCDHA6	chr5	140822960	141017347
PCDHA6_chr5_140822960_141017347	0/0	c0007	2853	2	0	2	0	0	0	copy fasta	PCDHA6	chr5	140822960	141017347
PCDHA6_chr5_140822960_141017347	0/0	c0008	2853	2	2	0	0	0	0	copy fasta	PCDHA6	chr5	140822960	141017347
PCDHA6_chr5_140822960_141017347	0/0	c0009	2853	2	0	0	2	0	0	copy fasta	PCDHA6	chr5	140822960	141017347
PCDHA6_chr5_140822960_141017347	0/0	c0010	2853	1	0	1	0	0	0	copy fasta	PCDHA6	chr5	140822960	141017347
PCDHA6_chr5_140822960_141017347	0/0	c0011	2853	1	1	0	0	0	0	copy fasta	PCDHA6	chr5	140822960	141017347
PCDHA6_chr5_140822960_141017347	0/0	c0012	2853	1	1	0	0	0	0	copy fasta	PCDHA6	chr5	140822960	141017347
PCDHA6_chr5_140822960_141017347	0/0	c0013	2853	1	1	0	0	0	0	copy fasta	PCDHA6	chr5	140822960	141017347
PCDHA6_chr5_140822960_141017347	0/0	c0014	2853	1	1	0	0	0	0	copy fasta	PCDHA6	chr5	140822960	141017347
PCDHA6_chr5_140822960_141017347	0/0	c0015	2853	1	0	0	1	0	0	copy fasta	PCDHA6	chr5	140822960	141017347
PCDHA6_chr5_140822960_141017347	0/0	c0016	2853	1	0	0	0	0	1	copy fasta	PCDHA6	chr5	140822960	141017347
PCDHA6_chr5_140822960_141017347	0/0	c0017	2853	1	0	0	0	0	1	copy fasta	PCDHA6	chr5	140822960	141017347
PCDHA6_chr5_140822960_141017347	0/0	c0018	2853	1	1	0	0	0	0	copy fasta	PCDHA6	chr5	140822960	141017347
PCDHA6_chr5_140822960_141017347	0/0	c0019	2853	1	0	0	0	0	1	copy fasta	PCDHA6	chr5	140822960	141017347
PCDHA6_chr5_140822960_141017347	0/0	c0020	2853	1	0	1	0	0	0	copy fasta	PCDHA6	chr5	140822960	141017347
PCDHA6_chr5_140822960_141017347	0/0	c0021	2853	1	0	1	0	0	0	copy fasta	PCDHA6	chr5	140822960	141017347
PCDHA6_chr5_140822960_141017347	0/0	c0022	2853	1	1	0	0	0	0	copy fasta	PCDHA6	chr5	140822960	141017347
PCDHA6_chr5_140822960_141017347	0/0	c0023	2853	1	0	1	0	0	0	copy fasta	PCDHA6	chr5	140822960	141017347
PCDHA6_chr5_140822960_141017347	0/0	c0024	2853	1	0	0	1	0	0	copy fasta	PCDHA6	chr5	140822960	141017347
PCDHA7_chr5_140829269_141017347	0/0	c0001	2814	93	24	17	34	2	16	copy fasta	PCDHA7	chr5	140829269	141017347
PCDHA7_chr5_140829269_141017347	1/1	c0002	2814	93	26	12	38	5	10	copy fasta	PCDHA7	chr5	140829269	141017347
PCDHA7_chr5_140829269_141017347	0/0	c0003	2814	9	8	1	0	0	0	copy fasta	PCDHA7	chr5	140829269	141017347
PCDHA7_chr5_140829269_141017347	0/0	c0004	2814	5	5	0	0	0	0	copy fasta	PCDHA7	chr5	140829269	141017347
PCDHA7_chr5_140829269_141017347	0/0	c0005	2814	5	4	1	0	0	0	copy fasta	PCDHA7	chr5	140829269	141017347
PCDHA7_chr5_140829269_141017347	0/0	c0006	2814	5	0	2	3	0	0	copy fasta	PCDHA7	chr5	140829269	141017347
PCDHA7_chr5_140829269_141017347	0/0	c0007	2814	4	0	4	0	0	0	copy fasta	PCDHA7	chr5	140829269	141017347
PCDHA7_chr5_140829269_141017347	0/0	c0008	2814	4	0	1	3	0	0	copy fasta	PCDHA7	chr5	140829269	141017347
PCDHA7_chr5_140829269_141017347	0/0	c0009	2814	4	3	1	0	0	0	copy fasta	PCDHA7	chr5	140829269	141017347
PCDHA7_chr5_140829269_141017347	0/0	c0010	2814	2	0	0	2	0	0	copy fasta	PCDHA7	chr5	140829269	141017347
PCDHA7_chr5_140829269_141017347	0/0	c0011	2814	2	2	0	0	0	0	copy fasta	PCDHA7	chr5	140829269	141017347
PCDHA7_chr5_140829269_141017347	0/0	c0012	2814	2	2	0	0	0	0	copy fasta	PCDHA7	chr5	140829269	141017347
PCDHA7_chr5_140829269_141017347	0/0	c0013	2814	2	2	0	0	0	0	copy fasta	PCDHA7	chr5	140829269	141017347
PCDHA7_chr5_140829269_141017347	0/0	c0014	2814	1	0	0	1	0	0	copy fasta	PCDHA7	chr5	140829269	141017347
PCDHA7_chr5_140829269_141017347	0/0	c0015	2814	1	0	0	1	0	0	copy fasta	PCDHA7	chr5	140829269	141017347