JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PCDHA7_chr5_140829269_141017347	0/0	c0016	2814	1	0	0	1	0	0	copy fasta	PCDHA7	chr5	140829269	141017347
PCDHA7_chr5_140829269_141017347	0/0	c0017	2814	1	0	0	1	0	0	copy fasta	PCDHA7	chr5	140829269	141017347
PCDHA7_chr5_140829269_141017347	0/0	c0018	2814	1	1	0	0	0	0	copy fasta	PCDHA7	chr5	140829269	141017347
PCDHA7_chr5_140829269_141017347	0/0	c0019	2814	1	0	0	1	0	0	copy fasta	PCDHA7	chr5	140829269	141017347
PCDHA7_chr5_140829269_141017347	0/0	c0020	2814	1	1	0	0	0	0	copy fasta	PCDHA7	chr5	140829269	141017347
PCDHA7_chr5_140829269_141017347	0/0	c0021	2814	1	0	0	0	0	1	copy fasta	PCDHA7	chr5	140829269	141017347
PCDHA7_chr5_140829269_141017347	0/0	c0022	2814	1	0	0	0	0	1	copy fasta	PCDHA7	chr5	140829269	141017347
PCDHA7_chr5_140829269_141017347	0/0	c0023	1465	1	0	0	1	0	0	copy fasta	PCDHA7	chr5	140829269	141017347
PCDHA7_chr5_140829269_141017347	0/0	c0024	2814	1	0	0	1	0	0	copy fasta	PCDHA7	chr5	140829269	141017347
PCDHA7_chr5_140829269_141017347	0/0	c0025	2814	1	0	0	0	1	0	copy fasta	PCDHA7	chr5	140829269	141017347
PCDHA7_chr5_140829269_141017347	0/0	c0026	2814	1	1	0	0	0	0	copy fasta	PCDHA7	chr5	140829269	141017347
PCDHA7_chr5_140829269_141017347	0/0	c0027	2814	1	0	1	0	0	0	copy fasta	PCDHA7	chr5	140829269	141017347
PCDHA7_chr5_140829269_141017347	0/0	c0028	2814	1	0	1	0	0	0	copy fasta	PCDHA7	chr5	140829269	141017347
PCDHA7_chr5_140829269_141017347	0/0	c0029	2814	1	0	1	0	0	0	copy fasta	PCDHA7	chr5	140829269	141017347
PCDHA7_chr5_140829269_141017347	0/0	c0030	2814	1	1	0	0	0	0	copy fasta	PCDHA7	chr5	140829269	141017347
PCDHA7_chr5_140829269_141017347	0/0	c0031	2814	1	0	0	1	0	0	copy fasta	PCDHA7	chr5	140829269	141017347
PCDHA8_chr5_140836187_141017347	1/1	c0001	2853	94	19	14	44	5	10	copy fasta	PCDHA8	chr5	140836187	141017347
PCDHA8_chr5_140836187_141017347	0/0	c0002	2853	72	7	11	36	2	16	copy fasta	PCDHA8	chr5	140836187	141017347
PCDHA8_chr5_140836187_141017347	0/0	c0003	2853	17	10	6	0	1	0	copy fasta	PCDHA8	chr5	140836187	141017347
PCDHA8_chr5_140836187_141017347	0/0	c0004	2853	12	10	2	0	0	0	copy fasta	PCDHA8	chr5	140836187	141017347
PCDHA8_chr5_140836187_141017347	0/0	c0005	1690	11	2	4	3	0	2	copy fasta	PCDHA8	chr5	140836187	141017347
PCDHA8_chr5_140836187_141017347	0/0	c0006	2853	8	7	1	0	0	0	copy fasta	PCDHA8	chr5	140836187	141017347
PCDHA8_chr5_140836187_141017347	0/0	c0007	2853	6	6	0	0	0	0	copy fasta	PCDHA8	chr5	140836187	141017347
PCDHA8_chr5_140836187_141017347	0/0	c0008	2853	5	0	0	5	0	0	copy fasta	PCDHA8	chr5	140836187	141017347
PCDHA8_chr5_140836187_141017347	0/0	c0009	2853	4	3	1	0	0	0	copy fasta	PCDHA8	chr5	140836187	141017347
PCDHA8_chr5_140836187_141017347	0/0	c0010	1690	3	3	0	0	0	0	copy fasta	PCDHA8	chr5	140836187	141017347
PCDHA8_chr5_140836187_141017347	0/0	c0011	2853	3	3	0	0	0	0	copy fasta	PCDHA8	chr5	140836187	141017347
PCDHA8_chr5_140836187_141017347	0/0	c0012	2853	3	0	3	0	0	0	copy fasta	PCDHA8	chr5	140836187	141017347
PCDHA8_chr5_140836187_141017347	0/0	c0013	2853	2	2	0	0	0	0	copy fasta	PCDHA8	chr5	140836187	141017347
PCDHA8_chr5_140836187_141017347	0/0	c0014	2853	1	1	0	0	0	0	copy fasta	PCDHA8	chr5	140836187	141017347
PCDHA8_chr5_140836187_141017347	0/0	c0015	2853	1	1	0	0	0	0	copy fasta	PCDHA8	chr5	140836187	141017347
PCDHA8_chr5_140836187_141017347	0/0	c0016	2853	1	0	1	0	0	0	copy fasta	PCDHA8	chr5	140836187	141017347
PCDHA8_chr5_140836187_141017347	0/0	c0017	1690	1	1	0	0	0	0	copy fasta	PCDHA8	chr5	140836187	141017347
PCDHA8_chr5_140836187_141017347	0/0	c0018	2853	1	1	0	0	0	0	copy fasta	PCDHA8	chr5	140836187	141017347
PCDHA8_chr5_140836187_141017347	0/0	c0019	2853	1	1	0	0	0	0	copy fasta	PCDHA8	chr5	140836187	141017347
PCDHA8_chr5_140836187_141017347	0/0	c0020	2853	1	0	0	1	0	0	copy fasta	PCDHA8	chr5	140836187	141017347
PCDHA8_chr5_140836187_141017347	0/0	c0021	2853	1	0	0	0	0	1	copy fasta	PCDHA8	chr5	140836187	141017347
PCDHA8_chr5_140836187_141017347	0/0	c0022	2853	1	0	0	0	0	1	copy fasta	PCDHA8	chr5	140836187	141017347
PCDHA8_chr5_140836187_141017347	0/0	c0023	2853	1	0	1	0	0	0	copy fasta	PCDHA8	chr5	140836187	141017347
PCDHA8_chr5_140836187_141017347	0/0	c0024	2853	1	0	0	1	0	0	copy fasta	PCDHA8	chr5	140836187	141017347
PCDHA8_chr5_140836187_141017347	0/0	c0025	2853	1	0	1	0	0	0	copy fasta	PCDHA8	chr5	140836187	141017347
PCDHA8_chr5_140836187_141017347	0/0	c0026	2853	1	0	0	1	0	0	copy fasta	PCDHA8	chr5	140836187	141017347
PCDHA8_chr5_140836187_141017347	0/0	c0027	2853	1	0	1	0	0	0	copy fasta	PCDHA8	chr5	140836187	141017347
PCDHA8_chr5_140836187_141017347	0/0	c0028	2853	1	0	0	1	0	0	copy fasta	PCDHA8	chr5	140836187	141017347
PCDHA8_chr5_140836187_141017347	0/0	c0029	2853	1	1	0	0	0	0	copy fasta	PCDHA8	chr5	140836187	141017347
PCDHA8_chr5_140836187_141017347	0/0	c0030	2853	1	1	0	0	0	0	copy fasta	PCDHA8	chr5	140836187	141017347
PCDHA8_chr5_140836187_141017347	0/0	c0031	2853	1	1	0	0	0	0	copy fasta	PCDHA8	chr5	140836187	141017347
PCDHA9_chr5_140843382_141017347	1/0	c0001	2853	79	10	12	43	2	11	copy fasta	PCDHA9	chr5	140843382	141017347
PCDHA9_chr5_140843382_141017347	0/0	c0002	2853	61	12	7	34	1	7	copy fasta	PCDHA9	chr5	140843382	141017347
PCDHA9_chr5_140843382_141017347	0/1	c0003	2853	19	2	4	7	1	4	copy fasta	PCDHA9	chr5	140843382	141017347