JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PCDHA9_chr5_140843382_141017347	0/0	c0004	2853	16	9	7	0	0	0	copy fasta	PCDHA9	chr5	140843382	141017347
PCDHA9_chr5_140843382_141017347	0/0	c0005	2853	14	13	1	0	0	0	copy fasta	PCDHA9	chr5	140843382	141017347
PCDHA9_chr5_140843382_141017347	0/0	c0006	2853	8	7	1	0	0	0	copy fasta	PCDHA9	chr5	140843382	141017347
PCDHA9_chr5_140843382_141017347	0/0	c0007	2853	5	0	4	0	1	0	copy fasta	PCDHA9	chr5	140843382	141017347
PCDHA9_chr5_140843382_141017347	0/0	c0008	2853	4	3	1	0	0	0	copy fasta	PCDHA9	chr5	140843382	141017347
PCDHA9_chr5_140843382_141017347	0/0	c0009	2853	4	4	0	0	0	0	copy fasta	PCDHA9	chr5	140843382	141017347
PCDHA9_chr5_140843382_141017347	0/0	c0010	2853	4	3	1	0	0	0	copy fasta	PCDHA9	chr5	140843382	141017347
PCDHA9_chr5_140843382_141017347	0/0	c0011	2853	3	0	2	1	0	0	copy fasta	PCDHA9	chr5	140843382	141017347
PCDHA9_chr5_140843382_141017347	0/0	c0012	2853	3	3	0	0	0	0	copy fasta	PCDHA9	chr5	140843382	141017347
PCDHA9_chr5_140843382_141017347	0/0	c0013	2853	3	0	2	0	0	1	copy fasta	PCDHA9	chr5	140843382	141017347
PCDHA9_chr5_140843382_141017347	0/0	c0014	2853	3	0	0	2	0	1	copy fasta	PCDHA9	chr5	140843382	141017347
PCDHA9_chr5_140843382_141017347	0/0	c0015	2853	2	0	2	0	0	0	copy fasta	PCDHA9	chr5	140843382	141017347
PCDHA9_chr5_140843382_141017347	0/0	c0016	2853	2	0	2	0	0	0	copy fasta	PCDHA9	chr5	140843382	141017347
PCDHA9_chr5_140843382_141017347	0/0	c0017	2853	2	2	0	0	0	0	copy fasta	PCDHA9	chr5	140843382	141017347
PCDHA9_chr5_140843382_141017347	0/0	c0018	2853	2	1	1	0	0	0	copy fasta	PCDHA9	chr5	140843382	141017347
PCDHA9_chr5_140843382_141017347	0/0	c0019	2853	2	0	0	2	0	0	copy fasta	PCDHA9	chr5	140843382	141017347
PCDHA9_chr5_140843382_141017347	0/0	c0020	2853	2	2	0	0	0	0	copy fasta	PCDHA9	chr5	140843382	141017347
PCDHA9_chr5_140843382_141017347	0/0	c0021	2853	1	0	0	1	0	0	copy fasta	PCDHA9	chr5	140843382	141017347
PCDHA9_chr5_140843382_141017347	0/0	c0022	2853	1	0	0	1	0	0	copy fasta	PCDHA9	chr5	140843382	141017347
PCDHA9_chr5_140843382_141017347	0/0	c0023	2853	1	0	0	0	0	1	copy fasta	PCDHA9	chr5	140843382	141017347
PCDHA9_chr5_140843382_141017347	0/0	c0024	2853	1	0	1	0	0	0	copy fasta	PCDHA9	chr5	140843382	141017347
PCDHA9_chr5_140843382_141017347	0/0	c0025	2853	1	0	0	0	0	1	copy fasta	PCDHA9	chr5	140843382	141017347
PCDHA9_chr5_140843382_141017347	0/0	c0026	2853	1	0	0	0	1	0	copy fasta	PCDHA9	chr5	140843382	141017347
PCDHA9_chr5_140843382_141017347	0/0	c0027	2853	1	0	0	0	1	0	copy fasta	PCDHA9	chr5	140843382	141017347
PCDHA9_chr5_140843382_141017347	0/0	c0028	2853	1	0	0	0	0	1	copy fasta	PCDHA9	chr5	140843382	141017347
PCDHA9_chr5_140843382_141017347	0/0	c0029	2853	1	0	0	1	0	0	copy fasta	PCDHA9	chr5	140843382	141017347
PCDHA9_chr5_140843382_141017347	0/0	c0030	2853	1	0	0	1	0	0	copy fasta	PCDHA9	chr5	140843382	141017347
PCDHA9_chr5_140843382_141017347	0/0	c0031	2853	1	0	0	1	0	0	copy fasta	PCDHA9	chr5	140843382	141017347
PCDHA9_chr5_140843382_141017347	0/0	c0032	2853	1	1	0	0	0	0	copy fasta	PCDHA9	chr5	140843382	141017347
PCDHA9_chr5_140843382_141017347	0/0	c0033	2853	1	0	0	0	0	1	copy fasta	PCDHA9	chr5	140843382	141017347
PCDHA9_chr5_140843382_141017347	0/0	c0034	2853	1	1	0	0	0	0	copy fasta	PCDHA9	chr5	140843382	141017347
PCDHA9_chr5_140843382_141017347	0/0	c0035	2853	1	1	0	0	0	0	copy fasta	PCDHA9	chr5	140843382	141017347
PCDHA9_chr5_140843382_141017347	0/0	c0036	2853	1	1	0	0	0	0	copy fasta	PCDHA9	chr5	140843382	141017347
PCDHA9_chr5_140843382_141017347	0/0	c0037	2853	1	0	0	0	1	0	copy fasta	PCDHA9	chr5	140843382	141017347
PCDHA9_chr5_140843382_141017347	0/0	c0038	2853	1	1	0	0	0	0	copy fasta	PCDHA9	chr5	140843382	141017347
PCDHAC1_chr5_140921299_141017347	1/0	c0001	2892	99	15	16	46	6	15	copy fasta	PCDHAC1	chr5	140921299	141017347
PCDHAC1_chr5_140921299_141017347	0/1	c0002	2892	93	20	14	45	2	11	copy fasta	PCDHAC1	chr5	140921299	141017347
PCDHAC1_chr5_140921299_141017347	0/0	c0003	2892	49	24	10	12	0	3	copy fasta	PCDHAC1	chr5	140921299	141017347
PCDHAC1_chr5_140921299_141017347	0/0	c0004	2892	8	3	4	0	1	0	copy fasta	PCDHAC1	chr5	140921299	141017347
PCDHAC1_chr5_140921299_141017347	0/0	c0005	2892	5	5	0	0	0	0	copy fasta	PCDHAC1	chr5	140921299	141017347
PCDHAC1_chr5_140921299_141017347	0/0	c0006	2892	3	0	3	0	0	0	copy fasta	PCDHAC1	chr5	140921299	141017347
PCDHAC1_chr5_140921299_141017347	0/0	c0007	2892	3	3	0	0	0	0	copy fasta	PCDHAC1	chr5	140921299	141017347
PCDHAC1_chr5_140921299_141017347	0/0	c0008	2892	2	2	0	0	0	0	copy fasta	PCDHAC1	chr5	140921299	141017347
PCDHAC1_chr5_140921299_141017347	0/0	c0009	2892	2	2	0	0	0	0	copy fasta	PCDHAC1	chr5	140921299	141017347
PCDHAC1_chr5_140921299_141017347	0/0	c0010	2892	1	0	0	0	1	0	copy fasta	PCDHAC1	chr5	140921299	141017347
PCDHAC1_chr5_140921299_141017347	0/0	c0011	2892	1	1	0	0	0	0	copy fasta	PCDHAC1	chr5	140921299	141017347
PCDHAC1_chr5_140921299_141017347	0/0	c0012	2892	1	1	0	0	0	0	copy fasta	PCDHAC1	chr5	140921299	141017347
PCDHAC1_chr5_140921299_141017347	0/0	c0013	2892	1	1	0	0	0	0	copy fasta	PCDHAC1	chr5	140921299	141017347
PCDHAC1_chr5_140921299_141017347	0/0	c0014	2892	1	0	1	0	0	0	copy fasta	PCDHAC1	chr5	140921299	141017347
PCDHAC1_chr5_140921299_141017347	0/0	c0015	2892	1	1	0	0	0	0	copy fasta	PCDHAC1	chr5	140921299	141017347