JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PCDHAC1_chr5_140921299_141017347	0/0	c0016	2892	1	0	0	0	0	1	copy fasta	PCDHAC1	chr5	140921299	141017347
PCDHAC1_chr5_140921299_141017347	0/0	c0017	2892	1	0	0	1	0	0	copy fasta	PCDHAC1	chr5	140921299	141017347
PCDHAC1_chr5_140921299_141017347	0/0	c0018	2892	1	0	0	0	0	1	copy fasta	PCDHAC1	chr5	140921299	141017347
PCDHAC1_chr5_140921299_141017347	0/0	c0019	2892	1	0	0	0	0	1	copy fasta	PCDHAC1	chr5	140921299	141017347
PCDHAC1_chr5_140921299_141017347	0/0	c0020	2892	1	0	1	0	0	0	copy fasta	PCDHAC1	chr5	140921299	141017347
PCDHAC1_chr5_140921299_141017347	0/0	c0021	2892	1	0	0	1	0	0	copy fasta	PCDHAC1	chr5	140921299	141017347
PCDHAC1_chr5_140921299_141017347	0/0	c0022	2892	1	0	0	1	0	0	copy fasta	PCDHAC1	chr5	140921299	141017347
PCDHAC1_chr5_140921299_141017347	0/0	c0023	2892	1	1	0	0	0	0	copy fasta	PCDHAC1	chr5	140921299	141017347
PCDHAC1_chr5_140921299_141017347	0/0	c0024	2892	1	1	0	0	0	0	copy fasta	PCDHAC1	chr5	140921299	141017347
PCDHAC1_chr5_140921299_141017347	0/0	c0025	2892	1	0	1	0	0	0	copy fasta	PCDHAC1	chr5	140921299	141017347
PCDHAC2_chr5_140961476_141017347	1/0	c0001	3024	126	22	19	57	10	17	copy fasta	PCDHAC2	chr5	140961476	141017347
PCDHAC2_chr5_140961476_141017347	0/1	c0002	3024	119	28	19	57	2	12	copy fasta	PCDHAC2	chr5	140961476	141017347
PCDHAC2_chr5_140961476_141017347	0/0	c0003	3024	33	15	6	9	2	1	copy fasta	PCDHAC2	chr5	140961476	141017347
PCDHAC2_chr5_140961476_141017347	0/0	c0004	3024	19	4	10	3	0	2	copy fasta	PCDHAC2	chr5	140961476	141017347
PCDHAC2_chr5_140961476_141017347	0/0	c0005	3024	5	5	0	0	0	0	copy fasta	PCDHAC2	chr5	140961476	141017347
PCDHAC2_chr5_140961476_141017347	0/0	c0006	3018	3	3	0	0	0	0	copy fasta	PCDHAC2	chr5	140961476	141017347
PCDHAC2_chr5_140961476_141017347	0/0	c0007	3018	3	3	0	0	0	0	copy fasta	PCDHAC2	chr5	140961476	141017347
PCDHAC2_chr5_140961476_141017347	0/0	c0008	3018	3	3	0	0	0	0	copy fasta	PCDHAC2	chr5	140961476	141017347
PCDHAC2_chr5_140961476_141017347	0/0	c0009	3024	2	0	2	0	0	0	copy fasta	PCDHAC2	chr5	140961476	141017347
PCDHAC2_chr5_140961476_141017347	0/0	c0010	3018	1	1	0	0	0	0	copy fasta	PCDHAC2	chr5	140961476	141017347
PCDHAC2_chr5_140961476_141017347	0/0	c0011	3024	1	0	0	0	0	1	copy fasta	PCDHAC2	chr5	140961476	141017347
PCDHAC2_chr5_140961476_141017347	0/0	c0012	3024	1	1	0	0	0	0	copy fasta	PCDHAC2	chr5	140961476	141017347
PCDHAC2_chr5_140961476_141017347	0/0	c0013	3024	1	1	0	0	0	0	copy fasta	PCDHAC2	chr5	140961476	141017347
PCDHAC2_chr5_140961476_141017347	0/0	c0014	3024	1	1	0	0	0	0	copy fasta	PCDHAC2	chr5	140961476	141017347
PCDHAC2_chr5_140961476_141017347	0/0	c0015	3024	1	0	0	1	0	0	copy fasta	PCDHAC2	chr5	140961476	141017347
PCDHAC2_chr5_140961476_141017347	0/0	c0016	3024	1	0	0	1	0	0	copy fasta	PCDHAC2	chr5	140961476	141017347
PCDHAC2_chr5_140961476_141017347	0/0	c0017	3024	1	0	0	0	0	1	copy fasta	PCDHAC2	chr5	140961476	141017347
PCDHAC2_chr5_140961476_141017347	0/0	c0018	3024	1	0	1	0	0	0	copy fasta	PCDHAC2	chr5	140961476	141017347
PCDHAC2_chr5_140961476_141017347	0/0	c0019	3024	1	1	0	0	0	0	copy fasta	PCDHAC2	chr5	140961476	141017347
PCDHAC2_chr5_140961476_141017347	0/0	c0020	3024	1	0	1	0	0	0	copy fasta	PCDHAC2	chr5	140961476	141017347
PCDHB10_chr5_141187353_141200647	1/0	c0001	2403	143	21	30	64	8	19	copy fasta	PCDHB10	chr5	141187353	141200647
PCDHB10_chr5_141187353_141200647	0/0	c0002	2397	135	1	20	102	4	8	copy fasta	PCDHB10	chr5	141187353	141200647
PCDHB10_chr5_141187353_141200647	0/1	c0003	2403	36	2	4	23	2	4	copy fasta	PCDHB10	chr5	141187353	141200647
PCDHB10_chr5_141187353_141200647	0/0	c0004	2397	30	5	7	12	4	2	copy fasta	PCDHB10	chr5	141187353	141200647
PCDHB10_chr5_141187353_141200647	0/0	c0005	2397	21	16	5	0	0	0	copy fasta	PCDHB10	chr5	141187353	141200647
PCDHB10_chr5_141187353_141200647	0/0	c0006	2403	8	0	0	8	0	0	copy fasta	PCDHB10	chr5	141187353	141200647
PCDHB10_chr5_141187353_141200647	0/0	c0007	2403	7	6	1	0	0	0	copy fasta	PCDHB10	chr5	141187353	141200647
PCDHB10_chr5_141187353_141200647	0/0	c0008	2397	6	6	0	0	0	0	copy fasta	PCDHB10	chr5	141187353	141200647
PCDHB10_chr5_141187353_141200647	0/0	c0009	2403	5	5	0	0	0	0	copy fasta	PCDHB10	chr5	141187353	141200647
PCDHB10_chr5_141187353_141200647	0/0	c0010	2403	4	2	2	0	0	0	copy fasta	PCDHB10	chr5	141187353	141200647
PCDHB10_chr5_141187353_141200647	0/0	c0011	2397	4	3	1	0	0	0	copy fasta	PCDHB10	chr5	141187353	141200647
PCDHB10_chr5_141187353_141200647	0/0	c0012	2403	3	1	2	0	0	0	copy fasta	PCDHB10	chr5	141187353	141200647
PCDHB10_chr5_141187353_141200647	0/0	c0013	2397	3	2	1	0	0	0	copy fasta	PCDHB10	chr5	141187353	141200647
PCDHB10_chr5_141187353_141200647	0/0	c0014	2397	3	3	0	0	0	0	copy fasta	PCDHB10	chr5	141187353	141200647
PCDHB10_chr5_141187353_141200647	0/0	c0015	2403	2	2	0	0	0	0	copy fasta	PCDHB10	chr5	141187353	141200647
PCDHB10_chr5_141187353_141200647	0/0	c0016	2403	2	2	0	0	0	0	copy fasta	PCDHB10	chr5	141187353	141200647
PCDHB10_chr5_141187353_141200647	0/0	c0017	2403	2	0	2	0	0	0	copy fasta	PCDHB10	chr5	141187353	141200647
PCDHB10_chr5_141187353_141200647	0/0	c0018	2397	2	0	2	0	0	0	copy fasta	PCDHB10	chr5	141187353	141200647
PCDHB10_chr5_141187353_141200647	0/0	c0019	2397	2	2	0	0	0	0	copy fasta	PCDHB10	chr5	141187353	141200647
PCDHB10_chr5_141187353_141200647	0/0	c0020	2397	2	2	0	0	0	0	copy fasta	PCDHB10	chr5	141187353	141200647