JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PCDHB10_chr5_141187353_141200647	0/0	c0021	2403	2	0	0	2	0	0	copy fasta	PCDHB10	chr5	141187353	141200647
PCDHB10_chr5_141187353_141200647	0/0	c0022	2397	2	2	0	0	0	0	copy fasta	PCDHB10	chr5	141187353	141200647
PCDHB10_chr5_141187353_141200647	0/0	c0023	1162	1	1	0	0	0	0	copy fasta	PCDHB10	chr5	141187353	141200647
PCDHB10_chr5_141187353_141200647	0/0	c0024	2397	1	1	0	0	0	0	copy fasta	PCDHB10	chr5	141187353	141200647
PCDHB10_chr5_141187353_141200647	0/0	c0025	2403	1	1	0	0	0	0	copy fasta	PCDHB10	chr5	141187353	141200647
PCDHB10_chr5_141187353_141200647	0/0	c0026	2403	1	1	0	0	0	0	copy fasta	PCDHB10	chr5	141187353	141200647
PCDHB10_chr5_141187353_141200647	0/0	c0027	2403	1	0	0	0	0	1	copy fasta	PCDHB10	chr5	141187353	141200647
PCDHB10_chr5_141187353_141200647	0/0	c0028	2403	1	1	0	0	0	0	copy fasta	PCDHB10	chr5	141187353	141200647
PCDHB10_chr5_141187353_141200647	0/0	c0029	2403	1	1	0	0	0	0	copy fasta	PCDHB10	chr5	141187353	141200647
PCDHB10_chr5_141187353_141200647	0/0	c0030	2403	1	1	0	0	0	0	copy fasta	PCDHB10	chr5	141187353	141200647
PCDHB10_chr5_141187353_141200647	0/0	c0031	2403	1	1	0	0	0	0	copy fasta	PCDHB10	chr5	141187353	141200647
PCDHB10_chr5_141187353_141200647	0/0	c0032	2403	1	0	1	0	0	0	copy fasta	PCDHB10	chr5	141187353	141200647
PCDHB10_chr5_141187353_141200647	0/0	c0033	2403	1	1	0	0	0	0	copy fasta	PCDHB10	chr5	141187353	141200647
PCDHB10_chr5_141187353_141200647	0/0	c0034	2403	1	1	0	0	0	0	copy fasta	PCDHB10	chr5	141187353	141200647
PCDHB10_chr5_141187353_141200647	0/0	c0035	2403	1	0	0	0	0	1	copy fasta	PCDHB10	chr5	141187353	141200647
PCDHB10_chr5_141187353_141200647	0/0	c0036	2403	1	0	1	0	0	0	copy fasta	PCDHB10	chr5	141187353	141200647
PCDHB10_chr5_141187353_141200647	0/0	c0037	2397	1	0	1	0	0	0	copy fasta	PCDHB10	chr5	141187353	141200647
PCDHB10_chr5_141187353_141200647	0/0	c0038	2397	1	0	0	1	0	0	copy fasta	PCDHB10	chr5	141187353	141200647
PCDHB10_chr5_141187353_141200647	0/0	c0039	2397	1	0	0	1	0	0	copy fasta	PCDHB10	chr5	141187353	141200647
PCDHB10_chr5_141187353_141200647	0/0	c0040	2397	1	0	0	0	0	1	copy fasta	PCDHB10	chr5	141187353	141200647
PCDHB10_chr5_141187353_141200647	0/0	c0041	2397	1	0	0	1	0	0	copy fasta	PCDHB10	chr5	141187353	141200647
PCDHB10_chr5_141187353_141200647	0/0	c0042	2397	1	0	1	0	0	0	copy fasta	PCDHB10	chr5	141187353	141200647
PCDHB10_chr5_141187353_141200647	0/0	c0043	2397	1	0	0	1	0	0	copy fasta	PCDHB10	chr5	141187353	141200647
PCDHB10_chr5_141187353_141200647	0/0	c0044	2397	1	0	0	0	0	1	copy fasta	PCDHB10	chr5	141187353	141200647
PCDHB10_chr5_141187353_141200647	0/0	c0045	2397	1	0	0	1	0	0	copy fasta	PCDHB10	chr5	141187353	141200647
PCDHB10_chr5_141187353_141200647	0/0	c0046	2397	1	0	0	1	0	0	copy fasta	PCDHB10	chr5	141187353	141200647
PCDHB10_chr5_141187353_141200647	0/0	c0047	2397	1	0	1	0	0	0	copy fasta	PCDHB10	chr5	141187353	141200647
PCDHB10_chr5_141187353_141200647	0/0	c0048	2397	1	1	0	0	0	0	copy fasta	PCDHB10	chr5	141187353	141200647
PCDHB10_chr5_141187353_141200647	0/0	c0049	2397	1	0	0	0	0	1	copy fasta	PCDHB10	chr5	141187353	141200647
PCDHB10_chr5_141187353_141200647	0/0	c0050	2397	1	1	0	0	0	0	copy fasta	PCDHB10	chr5	141187353	141200647
PCDHB10_chr5_141187353_141200647	0/0	c0051	2397	1	0	1	0	0	0	copy fasta	PCDHB10	chr5	141187353	141200647
PCDHB10_chr5_141187353_141200647	0/0	c0052	2403	1	0	1	0	0	0	copy fasta	PCDHB10	chr5	141187353	141200647
PCDHB10_chr5_141187353_141200647	0/0	c0053	2397	1	1	0	0	0	0	copy fasta	PCDHB10	chr5	141187353	141200647
PCDHB10_chr5_141187353_141200647	0/0	c0054	2337	1	0	0	1	0	0	copy fasta	PCDHB10	chr5	141187353	141200647
PCDHB11_chr5_141194627_141208779	1/1	c0001	2394	124	11	31	55	6	19	copy fasta	PCDHB11	chr5	141194627	141208779
PCDHB11_chr5_141194627_141208779	0/0	c0002	2394	82	1	14	55	4	8	copy fasta	PCDHB11	chr5	141194627	141208779
PCDHB11_chr5_141194627_141208779	0/0	c0003	2394	53	0	7	45	0	1	copy fasta	PCDHB11	chr5	141194627	141208779
PCDHB11_chr5_141194627_141208779	0/0	c0004	2394	46	9	4	31	1	1	copy fasta	PCDHB11	chr5	141194627	141208779
PCDHB11_chr5_141194627_141208779	0/0	c0005	2394	34	5	11	12	4	2	copy fasta	PCDHB11	chr5	141194627	141208779
PCDHB11_chr5_141194627_141208779	0/0	c0006	2394	21	20	1	0	0	0	copy fasta	PCDHB11	chr5	141194627	141208779
PCDHB11_chr5_141194627_141208779	0/0	c0007	2394	15	15	0	0	0	0	copy fasta	PCDHB11	chr5	141194627	141208779
PCDHB11_chr5_141194627_141208779	0/0	c0008	2394	8	0	0	8	0	0	copy fasta	PCDHB11	chr5	141194627	141208779
PCDHB11_chr5_141194627_141208779	0/0	c0009	2394	5	0	5	0	0	0	copy fasta	PCDHB11	chr5	141194627	141208779
PCDHB11_chr5_141194627_141208779	0/0	c0010	2394	5	5	0	0	0	0	copy fasta	PCDHB11	chr5	141194627	141208779
PCDHB11_chr5_141194627_141208779	0/0	c0011	2394	5	0	1	0	3	1	copy fasta	PCDHB11	chr5	141194627	141208779
PCDHB11_chr5_141194627_141208779	0/0	c0012	2394	5	5	0	0	0	0	copy fasta	PCDHB11	chr5	141194627	141208779
PCDHB11_chr5_141194627_141208779	0/0	c0013	2394	4	0	0	4	0	0	copy fasta	PCDHB11	chr5	141194627	141208779
PCDHB11_chr5_141194627_141208779	0/0	c0014	2394	4	2	2	0	0	0	copy fasta	PCDHB11	chr5	141194627	141208779
PCDHB11_chr5_141194627_141208779	0/0	c0015	2394	4	4	0	0	0	0	copy fasta	PCDHB11	chr5	141194627	141208779
PCDHB11_chr5_141194627_141208779	0/0	c0016	2394	4	4	0	0	0	0	copy fasta	PCDHB11	chr5	141194627	141208779