JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PCDHB11_chr5_141194627_141208779	0/0	c0017	2394	4	3	1	0	0	0	copy fasta	PCDHB11	chr5	141194627	141208779
PCDHB11_chr5_141194627_141208779	0/0	c0018	2394	3	1	2	0	0	0	copy fasta	PCDHB11	chr5	141194627	141208779
PCDHB11_chr5_141194627_141208779	0/0	c0019	2394	2	0	0	0	0	2	copy fasta	PCDHB11	chr5	141194627	141208779
PCDHB11_chr5_141194627_141208779	0/0	c0020	2394	2	2	0	0	0	0	copy fasta	PCDHB11	chr5	141194627	141208779
PCDHB11_chr5_141194627_141208779	0/0	c0021	2394	2	2	0	0	0	0	copy fasta	PCDHB11	chr5	141194627	141208779
PCDHB11_chr5_141194627_141208779	0/0	c0022	2394	1	1	0	0	0	0	copy fasta	PCDHB11	chr5	141194627	141208779
PCDHB11_chr5_141194627_141208779	0/0	c0023	2394	1	0	0	1	0	0	copy fasta	PCDHB11	chr5	141194627	141208779
PCDHB11_chr5_141194627_141208779	0/0	c0024	2394	1	0	0	0	0	1	copy fasta	PCDHB11	chr5	141194627	141208779
PCDHB11_chr5_141194627_141208779	0/0	c0025	2394	1	0	0	0	0	1	copy fasta	PCDHB11	chr5	141194627	141208779
PCDHB11_chr5_141194627_141208779	0/0	c0026	2394	1	0	0	0	0	1	copy fasta	PCDHB11	chr5	141194627	141208779
PCDHB11_chr5_141194627_141208779	0/0	c0027	2394	1	0	1	0	0	0	copy fasta	PCDHB11	chr5	141194627	141208779
PCDHB11_chr5_141194627_141208779	0/0	c0028	2394	1	1	0	0	0	0	copy fasta	PCDHB11	chr5	141194627	141208779
PCDHB11_chr5_141194627_141208779	0/0	c0029	2394	1	0	1	0	0	0	copy fasta	PCDHB11	chr5	141194627	141208779
PCDHB11_chr5_141194627_141208779	0/0	c0030	2394	1	0	1	0	0	0	copy fasta	PCDHB11	chr5	141194627	141208779
PCDHB11_chr5_141194627_141208779	0/0	c0031	2394	1	1	0	0	0	0	copy fasta	PCDHB11	chr5	141194627	141208779
PCDHB11_chr5_141194627_141208779	0/0	c0032	2394	1	0	0	1	0	0	copy fasta	PCDHB11	chr5	141194627	141208779
PCDHB11_chr5_141194627_141208779	0/0	c0033	2394	1	0	0	0	0	1	copy fasta	PCDHB11	chr5	141194627	141208779
PCDHB12_chr5_141203719_141217571	1/0	c0001	2388	258	27	52	139	10	29	copy fasta	PCDHB12	chr5	141203719	141217571
PCDHB12_chr5_141203719_141217571	0/0	c0002	2388	68	34	16	11	4	3	copy fasta	PCDHB12	chr5	141203719	141217571
PCDHB12_chr5_141203719_141217571	0/1	c0003	2388	46	5	5	27	2	6	copy fasta	PCDHB12	chr5	141203719	141217571
PCDHB12_chr5_141203719_141217571	0/0	c0004	2388	6	5	1	0	0	0	copy fasta	PCDHB12	chr5	141203719	141217571
PCDHB12_chr5_141203719_141217571	0/0	c0005	2388	6	0	0	6	0	0	copy fasta	PCDHB12	chr5	141203719	141217571
PCDHB12_chr5_141203719_141217571	0/0	c0006	2388	4	4	0	0	0	0	copy fasta	PCDHB12	chr5	141203719	141217571
PCDHB12_chr5_141203719_141217571	0/0	c0007	2388	4	0	0	4	0	0	copy fasta	PCDHB12	chr5	141203719	141217571
PCDHB12_chr5_141203719_141217571	0/0	c0008	2388	4	0	0	4	0	0	copy fasta	PCDHB12	chr5	141203719	141217571
PCDHB12_chr5_141203719_141217571	0/0	c0009	2388	4	4	0	0	0	0	copy fasta	PCDHB12	chr5	141203719	141217571
PCDHB12_chr5_141203719_141217571	0/0	c0010	2388	3	1	2	0	0	0	copy fasta	PCDHB12	chr5	141203719	141217571
PCDHB12_chr5_141203719_141217571	0/0	c0011	2388	3	0	3	0	0	0	copy fasta	PCDHB12	chr5	141203719	141217571
PCDHB12_chr5_141203719_141217571	0/0	c0012	2388	2	2	0	0	0	0	copy fasta	PCDHB12	chr5	141203719	141217571
PCDHB12_chr5_141203719_141217571	0/0	c0013	2388	2	2	0	0	0	0	copy fasta	PCDHB12	chr5	141203719	141217571
PCDHB12_chr5_141203719_141217571	0/0	c0014	2388	2	2	0	0	0	0	copy fasta	PCDHB12	chr5	141203719	141217571
PCDHB12_chr5_141203719_141217571	0/0	c0015	2388	2	2	0	0	0	0	copy fasta	PCDHB12	chr5	141203719	141217571
PCDHB12_chr5_141203719_141217571	0/0	c0016	2388	1	0	0	1	0	0	copy fasta	PCDHB12	chr5	141203719	141217571
PCDHB12_chr5_141203719_141217571	0/0	c0017	2388	1	1	0	0	0	0	copy fasta	PCDHB12	chr5	141203719	141217571
PCDHB12_chr5_141203719_141217571	0/0	c0018	2388	1	1	0	0	0	0	copy fasta	PCDHB12	chr5	141203719	141217571
PCDHB12_chr5_141203719_141217571	0/0	c0019	2388	1	1	0	0	0	0	copy fasta	PCDHB12	chr5	141203719	141217571
PCDHB12_chr5_141203719_141217571	0/0	c0020	2388	1	1	0	0	0	0	copy fasta	PCDHB12	chr5	141203719	141217571
PCDHB12_chr5_141203719_141217571	0/0	c0021	2388	1	0	0	1	0	0	copy fasta	PCDHB12	chr5	141203719	141217571
PCDHB12_chr5_141203719_141217571	0/0	c0022	2388	1	0	1	0	0	0	copy fasta	PCDHB12	chr5	141203719	141217571
PCDHB12_chr5_141203719_141217571	0/0	c0023	2388	1	0	0	0	0	1	copy fasta	PCDHB12	chr5	141203719	141217571
PCDHB12_chr5_141203719_141217571	0/0	c0024	2388	1	0	1	0	0	0	copy fasta	PCDHB12	chr5	141203719	141217571
PCDHB12_chr5_141203719_141217571	0/0	c0025	2388	1	1	0	0	0	0	copy fasta	PCDHB12	chr5	141203719	141217571
PCDHB12_chr5_141203719_141217571	0/0	c0026	2388	1	0	0	1	0	0	copy fasta	PCDHB12	chr5	141203719	141217571
PCDHB12_chr5_141203719_141217571	0/0	c0027	2388	1	0	0	1	0	0	copy fasta	PCDHB12	chr5	141203719	141217571
PCDHB12_chr5_141203719_141217571	0/0	c0028	2388	1	0	0	0	0	1	copy fasta	PCDHB12	chr5	141203719	141217571
PCDHB12_chr5_141203719_141217571	0/0	c0029	2388	1	0	0	1	0	0	copy fasta	PCDHB12	chr5	141203719	141217571
PCDHB12_chr5_141203719_141217571	0/0	c0030	2388	1	0	1	0	0	0	copy fasta	PCDHB12	chr5	141203719	141217571
PCDHB12_chr5_141203719_141217571	0/0	c0031	2388	1	1	0	0	0	0	copy fasta	PCDHB12	chr5	141203719	141217571
PCDHB12_chr5_141203719_141217571	0/0	c0032	2388	1	0	0	1	0	0	copy fasta	PCDHB12	chr5	141203719	141217571
PCDHB12_chr5_141203719_141217571	0/0	c0033	2388	1	0	0	1	0	0	copy fasta	PCDHB12	chr5	141203719	141217571