JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PCDHB14_chr5_141218343_141232759	0/0	c0019	2397	1	0	1	0	0	0	copy fasta	PCDHB14	chr5	141218343	141232759
PCDHB14_chr5_141218343_141232759	0/0	c0020	2397	1	1	0	0	0	0	copy fasta	PCDHB14	chr5	141218343	141232759
PCDHB14_chr5_141218343_141232759	0/0	c0021	2397	1	0	0	0	0	1	copy fasta	PCDHB14	chr5	141218343	141232759
PCDHB14_chr5_141218343_141232759	0/0	c0022	2397	1	1	0	0	0	0	copy fasta	PCDHB14	chr5	141218343	141232759
PCDHB14_chr5_141218343_141232759	0/0	c0023	2397	1	1	0	0	0	0	copy fasta	PCDHB14	chr5	141218343	141232759
PCDHB14_chr5_141218343_141232759	0/0	c0024	2397	1	1	0	0	0	0	copy fasta	PCDHB14	chr5	141218343	141232759
PCDHB14_chr5_141218343_141232759	0/0	c0025	2397	1	1	0	0	0	0	copy fasta	PCDHB14	chr5	141218343	141232759
PCDHB14_chr5_141218343_141232759	0/0	c0026	2397	1	1	0	0	0	0	copy fasta	PCDHB14	chr5	141218343	141232759
PCDHB14_chr5_141218343_141232759	0/0	c0027	2397	1	1	0	0	0	0	copy fasta	PCDHB14	chr5	141218343	141232759
PCDHB14_chr5_141218343_141232759	0/0	c0028	2397	1	1	0	0	0	0	copy fasta	PCDHB14	chr5	141218343	141232759
PCDHB14_chr5_141218343_141232759	0/0	c0029	2397	1	0	1	0	0	0	copy fasta	PCDHB14	chr5	141218343	141232759
PCDHB14_chr5_141218343_141232759	0/0	c0030	2397	1	0	0	1	0	0	copy fasta	PCDHB14	chr5	141218343	141232759
PCDHB14_chr5_141218343_141232759	0/0	c0031	2397	1	0	0	1	0	0	copy fasta	PCDHB14	chr5	141218343	141232759
PCDHB14_chr5_141218343_141232759	0/0	c0032	2397	1	0	0	1	0	0	copy fasta	PCDHB14	chr5	141218343	141232759
PCDHB14_chr5_141218343_141232759	0/0	c0033	2397	1	1	0	0	0	0	copy fasta	PCDHB14	chr5	141218343	141232759
PCDHB14_chr5_141218343_141232759	0/0	c0034	2397	1	0	0	1	0	0	copy fasta	PCDHB14	chr5	141218343	141232759
PCDHB14_chr5_141218343_141232759	0/0	c0035	2397	1	1	0	0	0	0	copy fasta	PCDHB14	chr5	141218343	141232759
PCDHB14_chr5_141218343_141232759	0/0	c0036	2397	1	0	0	1	0	0	copy fasta	PCDHB14	chr5	141218343	141232759
PCDHB14_chr5_141218343_141232759	0/0	c0037	2397	1	0	0	0	0	1	copy fasta	PCDHB14	chr5	141218343	141232759
PCDHB14_chr5_141218343_141232759	0/0	c0038	2397	1	0	1	0	0	0	copy fasta	PCDHB14	chr5	141218343	141232759
PCDHB15_chr5_141240395_141254365	1/0	c0001	2364	141	21	38	55	6	20	copy fasta	PCDHB15	chr5	141240395	141254365
PCDHB15_chr5_141240395_141254365	0/0	c0002	2364	110	1	17	82	3	7	copy fasta	PCDHB15	chr5	141240395	141254365
PCDHB15_chr5_141240395_141254365	0/1	c0003	2364	50	7	5	29	2	6	copy fasta	PCDHB15	chr5	141240395	141254365
PCDHB15_chr5_141240395_141254365	0/0	c0004	2364	32	5	8	14	2	3	copy fasta	PCDHB15	chr5	141240395	141254365
PCDHB15_chr5_141240395_141254365	0/0	c0005	2364	19	17	2	0	0	0	copy fasta	PCDHB15	chr5	141240395	141254365
PCDHB15_chr5_141240395_141254365	0/0	c0006	2364	6	5	1	0	0	0	copy fasta	PCDHB15	chr5	141240395	141254365
PCDHB15_chr5_141240395_141254365	0/0	c0007	2364	6	5	1	0	0	0	copy fasta	PCDHB15	chr5	141240395	141254365
PCDHB15_chr5_141240395_141254365	0/0	c0008	2364	5	4	1	0	0	0	copy fasta	PCDHB15	chr5	141240395	141254365
PCDHB15_chr5_141240395_141254365	0/0	c0009	2364	4	4	0	0	0	0	copy fasta	PCDHB15	chr5	141240395	141254365
PCDHB15_chr5_141240395_141254365	0/0	c0010	2364	4	4	0	0	0	0	copy fasta	PCDHB15	chr5	141240395	141254365
PCDHB15_chr5_141240395_141254365	0/0	c0011	2364	4	3	1	0	0	0	copy fasta	PCDHB15	chr5	141240395	141254365
PCDHB15_chr5_141240395_141254365	0/0	c0012	2364	3	0	0	0	0	3	copy fasta	PCDHB15	chr5	141240395	141254365
PCDHB15_chr5_141240395_141254365	0/0	c0013	2364	3	3	0	0	0	0	copy fasta	PCDHB15	chr5	141240395	141254365
PCDHB15_chr5_141240395_141254365	0/0	c0014	2364	3	0	0	3	0	0	copy fasta	PCDHB15	chr5	141240395	141254365
PCDHB15_chr5_141240395_141254365	0/0	c0015	2364	3	0	3	0	0	0	copy fasta	PCDHB15	chr5	141240395	141254365
PCDHB15_chr5_141240395_141254365	0/0	c0016	2364	2	0	0	2	0	0	copy fasta	PCDHB15	chr5	141240395	141254365
PCDHB15_chr5_141240395_141254365	0/0	c0017	2364	2	2	0	0	0	0	copy fasta	PCDHB15	chr5	141240395	141254365
PCDHB15_chr5_141240395_141254365	0/0	c0018	2364	2	2	0	0	0	0	copy fasta	PCDHB15	chr5	141240395	141254365
PCDHB15_chr5_141240395_141254365	0/0	c0019	2364	2	0	0	2	0	0	copy fasta	PCDHB15	chr5	141240395	141254365
PCDHB15_chr5_141240395_141254365	0/0	c0020	2364	2	0	0	2	0	0	copy fasta	PCDHB15	chr5	141240395	141254365
PCDHB15_chr5_141240395_141254365	0/0	c0021	2364	2	0	0	2	0	0	copy fasta	PCDHB15	chr5	141240395	141254365
PCDHB15_chr5_141240395_141254365	0/0	c0022	2364	2	0	2	0	0	0	copy fasta	PCDHB15	chr5	141240395	141254365
PCDHB15_chr5_141240395_141254365	0/0	c0023	2364	2	0	0	0	0	2	copy fasta	PCDHB15	chr5	141240395	141254365
PCDHB15_chr5_141240395_141254365	0/0	c0024	2364	1	0	0	1	0	0	copy fasta	PCDHB15	chr5	141240395	141254365
PCDHB15_chr5_141240395_141254365	0/0	c0025	2364	1	1	0	0	0	0	copy fasta	PCDHB15	chr5	141240395	141254365
PCDHB15_chr5_141240395_141254365	0/0	c0026	2364	1	1	0	0	0	0	copy fasta	PCDHB15	chr5	141240395	141254365
PCDHB15_chr5_141240395_141254365	0/0	c0027	2364	1	1	0	0	0	0	copy fasta	PCDHB15	chr5	141240395	141254365
PCDHB15_chr5_141240395_141254365	0/0	c0028	2364	1	0	0	1	0	0	copy fasta	PCDHB15	chr5	141240395	141254365
PCDHB15_chr5_141240395_141254365	0/0	c0029	2364	1	0	1	0	0	0	copy fasta	PCDHB15	chr5	141240395	141254365
PCDHB15_chr5_141240395_141254365	0/0	c0030	2364	1	0	0	1	0	0	copy fasta	PCDHB15	chr5	141240395	141254365