JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PCDHB15_chr5_141240395_141254365	0/0	c0031	2364	1	0	0	0	1	0	copy fasta	PCDHB15	chr5	141240395	141254365
PCDHB15_chr5_141240395_141254365	0/0	c0032	2364	1	0	0	0	0	1	copy fasta	PCDHB15	chr5	141240395	141254365
PCDHB15_chr5_141240395_141254365	0/0	c0033	2364	1	1	0	0	0	0	copy fasta	PCDHB15	chr5	141240395	141254365
PCDHB15_chr5_141240395_141254365	0/0	c0034	2364	1	1	0	0	0	0	copy fasta	PCDHB15	chr5	141240395	141254365
PCDHB15_chr5_141240395_141254365	0/0	c0035	2364	1	1	0	0	0	0	copy fasta	PCDHB15	chr5	141240395	141254365
PCDHB15_chr5_141240395_141254365	0/0	c0036	2364	1	1	0	0	0	0	copy fasta	PCDHB15	chr5	141240395	141254365
PCDHB16_chr5_141177387_141191226	1/0	c0001	2331	149	28	32	63	8	17	copy fasta	PCDHB16	chr5	141177387	141191226
PCDHB16_chr5_141177387_141191226	0/0	c0002	2331	137	1	17	103	4	12	copy fasta	PCDHB16	chr5	141177387	141191226
PCDHB16_chr5_141177387_141191226	0/1	c0003	2331	53	11	7	28	2	4	copy fasta	PCDHB16	chr5	141177387	141191226
PCDHB16_chr5_141177387_141191226	0/0	c0004	2331	38	7	11	13	4	3	copy fasta	PCDHB16	chr5	141177387	141191226
PCDHB16_chr5_141177387_141191226	0/0	c0005	2331	21	16	5	0	0	0	copy fasta	PCDHB16	chr5	141177387	141191226
PCDHB16_chr5_141177387_141191226	0/0	c0006	2331	4	2	2	0	0	0	copy fasta	PCDHB16	chr5	141177387	141191226
PCDHB16_chr5_141177387_141191226	0/0	c0007	2331	4	3	1	0	0	0	copy fasta	PCDHB16	chr5	141177387	141191226
PCDHB16_chr5_141177387_141191226	0/0	c0008	2331	4	4	0	0	0	0	copy fasta	PCDHB16	chr5	141177387	141191226
PCDHB16_chr5_141177387_141191226	0/0	c0009	2331	4	3	1	0	0	0	copy fasta	PCDHB16	chr5	141177387	141191226
PCDHB16_chr5_141177387_141191226	0/0	c0010	2331	4	4	0	0	0	0	copy fasta	PCDHB16	chr5	141177387	141191226
PCDHB16_chr5_141177387_141191226	0/0	c0011	2331	3	0	3	0	0	0	copy fasta	PCDHB16	chr5	141177387	141191226
PCDHB16_chr5_141177387_141191226	0/0	c0012	2331	3	0	0	3	0	0	copy fasta	PCDHB16	chr5	141177387	141191226
PCDHB16_chr5_141177387_141191226	0/0	c0013	2331	3	3	0	0	0	0	copy fasta	PCDHB16	chr5	141177387	141191226
PCDHB16_chr5_141177387_141191226	0/0	c0014	2328	3	1	2	0	0	0	copy fasta	PCDHB16	chr5	141177387	141191226
PCDHB16_chr5_141177387_141191226	0/0	c0015	2331	2	2	0	0	0	0	copy fasta	PCDHB16	chr5	141177387	141191226
PCDHB16_chr5_141177387_141191226	0/0	c0016	2331	2	2	0	0	0	0	copy fasta	PCDHB16	chr5	141177387	141191226
PCDHB16_chr5_141177387_141191226	0/0	c0017	2331	2	2	0	0	0	0	copy fasta	PCDHB16	chr5	141177387	141191226
PCDHB16_chr5_141177387_141191226	0/0	c0018	2331	1	0	0	0	0	1	copy fasta	PCDHB16	chr5	141177387	141191226
PCDHB16_chr5_141177387_141191226	0/0	c0019	2331	1	0	1	0	0	0	copy fasta	PCDHB16	chr5	141177387	141191226
PCDHB16_chr5_141177387_141191226	0/0	c0020	2331	1	0	0	1	0	0	copy fasta	PCDHB16	chr5	141177387	141191226
PCDHB16_chr5_141177387_141191226	0/0	c0021	2331	1	0	0	1	0	0	copy fasta	PCDHB16	chr5	141177387	141191226
PCDHB16_chr5_141177387_141191226	0/0	c0022	2331	1	0	0	1	0	0	copy fasta	PCDHB16	chr5	141177387	141191226
PCDHB16_chr5_141177387_141191226	0/0	c0023	2331	1	1	0	0	0	0	copy fasta	PCDHB16	chr5	141177387	141191226
PCDHB16_chr5_141177387_141191226	0/0	c0024	2331	1	1	0	0	0	0	copy fasta	PCDHB16	chr5	141177387	141191226
PCDHB16_chr5_141177387_141191226	0/0	c0025	2331	1	0	0	1	0	0	copy fasta	PCDHB16	chr5	141177387	141191226
PCDHB16_chr5_141177387_141191226	0/0	c0026	2331	1	0	0	1	0	0	copy fasta	PCDHB16	chr5	141177387	141191226
PCDHB16_chr5_141177387_141191226	0/0	c0027	2331	1	0	0	0	0	1	copy fasta	PCDHB16	chr5	141177387	141191226
PCDHB16_chr5_141177387_141191226	0/0	c0028	2331	1	1	0	0	0	0	copy fasta	PCDHB16	chr5	141177387	141191226
PCDHB16_chr5_141177387_141191226	0/0	c0029	2331	1	0	0	1	0	0	copy fasta	PCDHB16	chr5	141177387	141191226
PCDHB16_chr5_141177387_141191226	0/0	c0030	2331	1	0	0	1	0	0	copy fasta	PCDHB16	chr5	141177387	141191226
PCDHB16_chr5_141177387_141191226	0/0	c0031	2331	1	0	0	1	0	0	copy fasta	PCDHB16	chr5	141177387	141191226
PCDHB16_chr5_141177387_141191226	0/0	c0032	2331	1	1	0	0	0	0	copy fasta	PCDHB16	chr5	141177387	141191226
PCDHB16_chr5_141177387_141191226	0/0	c0033	2331	1	1	0	0	0	0	copy fasta	PCDHB16	chr5	141177387	141191226
PCDHB1_chr5_141046374_141064346	1/1	c0001	2457	358	70	62	173	11	40	copy fasta	PCDHB1	chr5	141046374	141064346
PCDHB1_chr5_141046374_141064346	0/0	c0002	2457	21	21	0	0	0	0	copy fasta	PCDHB1	chr5	141046374	141064346
PCDHB1_chr5_141046374_141064346	0/0	c0003	2457	16	0	0	16	0	0	copy fasta	PCDHB1	chr5	141046374	141064346
PCDHB1_chr5_141046374_141064346	0/0	c0004	2457	5	0	4	0	0	1	copy fasta	PCDHB1	chr5	141046374	141064346
PCDHB1_chr5_141046374_141064346	0/0	c0005	2457	4	0	3	0	1	0	copy fasta	PCDHB1	chr5	141046374	141064346
PCDHB1_chr5_141046374_141064346	0/0	c0006	2457	4	3	1	0	0	0	copy fasta	PCDHB1	chr5	141046374	141064346
PCDHB1_chr5_141046374_141064346	0/0	c0007	2457	2	2	0	0	0	0	copy fasta	PCDHB1	chr5	141046374	141064346
PCDHB1_chr5_141046374_141064346	0/0	c0008	2457	2	2	0	0	0	0	copy fasta	PCDHB1	chr5	141046374	141064346
PCDHB1_chr5_141046374_141064346	0/0	c0009	2457	1	0	0	1	0	0	copy fasta	PCDHB1	chr5	141046374	141064346
PCDHB1_chr5_141046374_141064346	0/0	c0010	2457	1	0	1	0	0	0	copy fasta	PCDHB1	chr5	141046374	141064346
PCDHB1_chr5_141046374_141064346	0/0	c0011	2457	1	0	0	1	0	0	copy fasta	PCDHB1	chr5	141046374	141064346