JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ARHGEF10L_chr1_17534698_17702869	0/1	c0001	3840	66	18	22	13	1	11	copy fasta	ARHGEF10L	chr1	17534698	17702869
ARHGEF10L_chr1_17534698_17702869	0/0	c0002	3840	8	1	2	1	0	4	copy fasta	ARHGEF10L	chr1	17534698	17702869
ARHGEF10L_chr1_17534698_17702869	0/0	c0003	3840	8	0	3	4	0	1	copy fasta	ARHGEF10L	chr1	17534698	17702869
ARHGEF10L_chr1_17534698_17702869	1/0	c0004	3840	7	3	2	1	0	0	copy fasta	ARHGEF10L	chr1	17534698	17702869
ARHGEF10L_chr1_17534698_17702869	0/0	c0005	3840	6	6	0	0	0	0	copy fasta	ARHGEF10L	chr1	17534698	17702869
ARHGEF10L_chr1_17534698_17702869	0/0	c0006	3840	6	4	2	0	0	0	copy fasta	ARHGEF10L	chr1	17534698	17702869
ARHGEF10L_chr1_17534698_17702869	0/0	c0007	3840	5	4	1	0	0	0	copy fasta	ARHGEF10L	chr1	17534698	17702869
ARHGEF10L_chr1_17534698_17702869	0/0	c0008	3840	4	0	1	0	0	3	copy fasta	ARHGEF10L	chr1	17534698	17702869
ARHGEF10L_chr1_17534698_17702869	0/0	c0009	3840	3	1	2	0	0	0	copy fasta	ARHGEF10L	chr1	17534698	17702869
ARHGEF10L_chr1_17534698_17702869	0/0	c0010	3840	3	3	0	0	0	0	copy fasta	ARHGEF10L	chr1	17534698	17702869
ARHGEF10L_chr1_17534698_17702869	0/0	c0011	3840	3	0	2	1	0	0	copy fasta	ARHGEF10L	chr1	17534698	17702869
ARHGEF10L_chr1_17534698_17702869	0/0	c0012	3840	3	0	2	0	1	0	copy fasta	ARHGEF10L	chr1	17534698	17702869
ARHGEF10L_chr1_17534698_17702869	0/0	c0013	3840	3	0	2	0	1	0	copy fasta	ARHGEF10L	chr1	17534698	17702869
ARHGEF10L_chr1_17534698_17702869	0/0	c0014	3840	2	0	0	2	0	0	copy fasta	ARHGEF10L	chr1	17534698	17702869
ARHGEF10L_chr1_17534698_17702869	0/0	c0015	3840	2	0	1	0	0	1	copy fasta	ARHGEF10L	chr1	17534698	17702869
ARHGEF10L_chr1_17534698_17702869	0/0	c0016	3840	2	1	0	1	0	0	copy fasta	ARHGEF10L	chr1	17534698	17702869
ARHGEF10L_chr1_17534698_17702869	0/0	c0017	3840	2	2	0	0	0	0	copy fasta	ARHGEF10L	chr1	17534698	17702869
ARHGEF10L_chr1_17534698_17702869	0/0	c0018	3840	2	2	0	0	0	0	copy fasta	ARHGEF10L	chr1	17534698	17702869
ARHGEF10L_chr1_17534698_17702869	0/0	c0019	3840	2	2	0	0	0	0	copy fasta	ARHGEF10L	chr1	17534698	17702869
ARHGEF10L_chr1_17534698_17702869	0/0	c0020	3840	2	1	1	0	0	0	copy fasta	ARHGEF10L	chr1	17534698	17702869
ARHGEF10L_chr1_17534698_17702869	0/0	c0021	3840	1	0	0	1	0	0	copy fasta	ARHGEF10L	chr1	17534698	17702869
ARHGEF10L_chr1_17534698_17702869	0/0	c0022	3840	1	0	0	1	0	0	copy fasta	ARHGEF10L	chr1	17534698	17702869
ARHGEF10L_chr1_17534698_17702869	0/0	c0023	3840	1	0	1	0	0	0	copy fasta	ARHGEF10L	chr1	17534698	17702869
ARHGEF10L_chr1_17534698_17702869	0/0	c0024	3840	1	1	0	0	0	0	copy fasta	ARHGEF10L	chr1	17534698	17702869
ARHGEF10L_chr1_17534698_17702869	0/0	c0025	3840	1	0	1	0	0	0	copy fasta	ARHGEF10L	chr1	17534698	17702869
ARHGEF10L_chr1_17534698_17702869	0/0	c0026	3840	1	0	0	1	0	0	copy fasta	ARHGEF10L	chr1	17534698	17702869
ARHGEF10L_chr1_17534698_17702869	0/0	c0027	3840	1	0	0	1	0	0	copy fasta	ARHGEF10L	chr1	17534698	17702869
ARHGEF10L_chr1_17534698_17702869	0/0	c0028	3840	1	0	0	1	0	0	copy fasta	ARHGEF10L	chr1	17534698	17702869
ARHGEF10L_chr1_17534698_17702869	0/0	c0029	3840	1	1	0	0	0	0	copy fasta	ARHGEF10L	chr1	17534698	17702869
ARHGEF10L_chr1_17534698_17702869	0/0	c0030	3840	1	1	0	0	0	0	copy fasta	ARHGEF10L	chr1	17534698	17702869
ARHGEF10L_chr1_17534698_17702869	0/0	c0031	3840	1	1	0	0	0	0	copy fasta	ARHGEF10L	chr1	17534698	17702869
ARHGEF10L_chr1_17534698_17702869	0/0	c0032	3840	1	1	0	0	0	0	copy fasta	ARHGEF10L	chr1	17534698	17702869
ARHGEF10L_chr1_17534698_17702869	0/0	c0033	3840	1	1	0	0	0	0	copy fasta	ARHGEF10L	chr1	17534698	17702869
ARHGEF10L_chr1_17534698_17702869	0/0	c0034	3840	1	1	0	0	0	0	copy fasta	ARHGEF10L	chr1	17534698	17702869
ARHGEF10L_chr1_17534698_17702869	0/0	c0035	3840	1	0	0	1	0	0	copy fasta	ARHGEF10L	chr1	17534698	17702869
ARHGEF10L_chr1_17534698_17702869	0/0	c0036	3840	1	0	0	1	0	0	copy fasta	ARHGEF10L	chr1	17534698	17702869
ARHGEF10L_chr1_17534698_17702869	0/0	c0037	3840	1	1	0	0	0	0	copy fasta	ARHGEF10L	chr1	17534698	17702869
ARHGEF10L_chr1_17534698_17702869	0/0	c0038	3840	1	0	0	0	0	1	copy fasta	ARHGEF10L	chr1	17534698	17702869
ARHGEF10L_chr1_17534698_17702869	0/0	c0039	3840	1	0	0	1	0	0	copy fasta	ARHGEF10L	chr1	17534698	17702869
ARHGEF10L_chr1_17534698_17702869	0/0	c0040	3840	1	0	1	0	0	0	copy fasta	ARHGEF10L	chr1	17534698	17702869
ARHGEF10L_chr1_17534698_17702869	0/0	c0041	3840	1	1	0	0	0	0	copy fasta	ARHGEF10L	chr1	17534698	17702869
ARHGEF10L_chr1_17534698_17702869	0/0	c0042	3840	1	0	1	0	0	0	copy fasta	ARHGEF10L	chr1	17534698	17702869
ARHGEF10L_chr1_17534698_17702869	0/0	c0043	3840	1	1	0	0	0	0	copy fasta	ARHGEF10L	chr1	17534698	17702869
ARHGEF10L_chr1_17534698_17702869	0/0	c0044	3840	1	1	0	0	0	0	copy fasta	ARHGEF10L	chr1	17534698	17702869
ARHGEF10L_chr1_17534698_17702869	0/0	c0045	3840	1	0	1	0	0	0	copy fasta	ARHGEF10L	chr1	17534698	17702869
ARHGEF10L_chr1_17534698_17702869	0/0	c0046	3840	1	0	0	0	1	0	copy fasta	ARHGEF10L	chr1	17534698	17702869
ARHGEF10L_chr1_17534698_17702869	0/0	c0047	3840	1	1	0	0	0	0	copy fasta	ARHGEF10L	chr1	17534698	17702869
ARHGEF10L_chr1_17534698_17702869	0/0	c0048	3840	1	0	0	0	0	1	copy fasta	ARHGEF10L	chr1	17534698	17702869
ARHGEF10L_chr1_17534698_17702869	0/0	c0049	3840	1	0	0	1	0	0	copy fasta	ARHGEF10L	chr1	17534698	17702869
ARHGEF10_chr8_1818926_1963641	0/0	c0001	4035	24	3	6	6	4	5	copy fasta	ARHGEF10	chr8	1818926	1963641