JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PCDHB1_chr5_141046374_141064346	0/0	c0012	2457	1	0	0	0	0	1	copy fasta	PCDHB1	chr5	141046374	141064346
PCDHB1_chr5_141046374_141064346	0/0	c0013	2457	1	0	1	0	0	0	copy fasta	PCDHB1	chr5	141046374	141064346
PCDHB1_chr5_141046374_141064346	0/0	c0014	2457	1	0	0	0	1	0	copy fasta	PCDHB1	chr5	141046374	141064346
PCDHB1_chr5_141046374_141064346	0/0	c0015	2457	1	0	0	1	0	0	copy fasta	PCDHB1	chr5	141046374	141064346
PCDHB1_chr5_141046374_141064346	0/0	c0016	2390	1	0	0	0	1	0	copy fasta	PCDHB1	chr5	141046374	141064346
PCDHB1_chr5_141046374_141064346	0/0	c0017	2457	1	1	0	0	0	0	copy fasta	PCDHB1	chr5	141046374	141064346
PCDHB1_chr5_141046374_141064346	0/0	c0018	2457	1	1	0	0	0	0	copy fasta	PCDHB1	chr5	141046374	141064346
PCDHB2_chr5_141089615_141103703	1/1	c0001	2397	178	45	31	70	7	23	copy fasta	PCDHB2	chr5	141089615	141103703
PCDHB2_chr5_141089615_141103703	0/0	c0002	2397	108	8	15	63	5	17	copy fasta	PCDHB2	chr5	141089615	141103703
PCDHB2_chr5_141089615_141103703	0/0	c0003	2397	31	8	11	10	1	1	copy fasta	PCDHB2	chr5	141089615	141103703
PCDHB2_chr5_141089615_141103703	0/0	c0004	2397	27	1	2	22	1	1	copy fasta	PCDHB2	chr5	141089615	141103703
PCDHB2_chr5_141089615_141103703	0/0	c0005	2397	20	4	2	14	0	0	copy fasta	PCDHB2	chr5	141089615	141103703
PCDHB2_chr5_141089615_141103703	0/0	c0006	2397	17	17	0	0	0	0	copy fasta	PCDHB2	chr5	141089615	141103703
PCDHB2_chr5_141089615_141103703	0/0	c0007	2397	6	6	0	0	0	0	copy fasta	PCDHB2	chr5	141089615	141103703
PCDHB2_chr5_141089615_141103703	0/0	c0008	2397	5	0	0	5	0	0	copy fasta	PCDHB2	chr5	141089615	141103703
PCDHB2_chr5_141089615_141103703	0/0	c0009	2397	5	2	3	0	0	0	copy fasta	PCDHB2	chr5	141089615	141103703
PCDHB2_chr5_141089615_141103703	0/0	c0010	2397	2	2	0	0	0	0	copy fasta	PCDHB2	chr5	141089615	141103703
PCDHB2_chr5_141089615_141103703	0/0	c0011	2397	2	2	0	0	0	0	copy fasta	PCDHB2	chr5	141089615	141103703
PCDHB2_chr5_141089615_141103703	0/0	c0012	2397	2	0	2	0	0	0	copy fasta	PCDHB2	chr5	141089615	141103703
PCDHB2_chr5_141089615_141103703	0/0	c0013	2397	2	0	0	2	0	0	copy fasta	PCDHB2	chr5	141089615	141103703
PCDHB2_chr5_141089615_141103703	0/0	c0014	2115	1	1	0	0	0	0	copy fasta	PCDHB2	chr5	141089615	141103703
PCDHB2_chr5_141089615_141103703	0/0	c0015	2397	1	0	0	1	0	0	copy fasta	PCDHB2	chr5	141089615	141103703
PCDHB2_chr5_141089615_141103703	0/0	c0016	2397	1	1	0	0	0	0	copy fasta	PCDHB2	chr5	141089615	141103703
PCDHB2_chr5_141089615_141103703	0/0	c0017	2397	1	0	1	0	0	0	copy fasta	PCDHB2	chr5	141089615	141103703
PCDHB2_chr5_141089615_141103703	0/0	c0018	2397	1	1	0	0	0	0	copy fasta	PCDHB2	chr5	141089615	141103703
PCDHB2_chr5_141089615_141103703	0/0	c0019	2397	1	0	0	0	0	1	copy fasta	PCDHB2	chr5	141089615	141103703
PCDHB2_chr5_141089615_141103703	0/0	c0020	2397	1	0	0	1	0	0	copy fasta	PCDHB2	chr5	141089615	141103703
PCDHB2_chr5_141089615_141103703	0/0	c0021	2397	1	1	0	0	0	0	copy fasta	PCDHB2	chr5	141089615	141103703
PCDHB2_chr5_141089615_141103703	0/0	c0022	2397	1	0	0	0	0	1	copy fasta	PCDHB2	chr5	141089615	141103703
PCDHB2_chr5_141089615_141103703	0/0	c0023	2397	1	0	0	1	0	0	copy fasta	PCDHB2	chr5	141089615	141103703
PCDHB2_chr5_141089615_141103703	0/0	c0024	2397	1	1	0	0	0	0	copy fasta	PCDHB2	chr5	141089615	141103703
PCDHB2_chr5_141089615_141103703	0/0	c0025	2397	1	0	0	1	0	0	copy fasta	PCDHB2	chr5	141089615	141103703
PCDHB2_chr5_141089615_141103703	0/0	c0026	2397	1	0	1	0	0	0	copy fasta	PCDHB2	chr5	141089615	141103703
PCDHB3_chr5_141095473_141108827	0/0	c0001	2391	218	40	27	120	9	22	copy fasta	PCDHB3	chr5	141095473	141108827
PCDHB3_chr5_141095473_141108827	0/1	c0002	2391	66	7	23	15	5	15	copy fasta	PCDHB3	chr5	141095473	141108827
PCDHB3_chr5_141095473_141108827	0/0	c0003	2391	50	11	12	24	1	2	copy fasta	PCDHB3	chr5	141095473	141108827
PCDHB3_chr5_141095473_141108827	0/0	c0004	2391	28	1	2	24	1	0	copy fasta	PCDHB3	chr5	141095473	141108827
PCDHB3_chr5_141095473_141108827	0/0	c0005	2391	20	20	0	0	0	0	copy fasta	PCDHB3	chr5	141095473	141108827
PCDHB3_chr5_141095473_141108827	0/0	c0006	2391	9	0	0	9	0	0	copy fasta	PCDHB3	chr5	141095473	141108827
PCDHB3_chr5_141095473_141108827	0/0	c0007	2391	4	4	0	0	0	0	copy fasta	PCDHB3	chr5	141095473	141108827
PCDHB3_chr5_141095473_141108827	0/0	c0008	2391	3	0	0	3	0	0	copy fasta	PCDHB3	chr5	141095473	141108827
PCDHB3_chr5_141095473_141108827	0/0	c0009	2391	3	3	0	0	0	0	copy fasta	PCDHB3	chr5	141095473	141108827
PCDHB3_chr5_141095473_141108827	0/0	c0010	2391	3	3	0	0	0	0	copy fasta	PCDHB3	chr5	141095473	141108827
PCDHB3_chr5_141095473_141108827	0/0	c0011	2391	3	1	2	0	0	0	copy fasta	PCDHB3	chr5	141095473	141108827
PCDHB3_chr5_141095473_141108827	0/0	c0012	2391	2	2	0	0	0	0	copy fasta	PCDHB3	chr5	141095473	141108827
PCDHB3_chr5_141095473_141108827	0/0	c0013	2391	2	2	0	0	0	0	copy fasta	PCDHB3	chr5	141095473	141108827
PCDHB3_chr5_141095473_141108827	0/0	c0014	2391	2	2	0	0	0	0	copy fasta	PCDHB3	chr5	141095473	141108827
PCDHB3_chr5_141095473_141108827	1/0	c0015	2391	1	0	0	0	0	0	copy fasta	PCDHB3	chr5	141095473	141108827
PCDHB3_chr5_141095473_141108827	0/0	c0016	2391	1	0	0	1	0	0	copy fasta	PCDHB3	chr5	141095473	141108827
PCDHB3_chr5_141095473_141108827	0/0	c0017	2391	1	0	0	0	0	1	copy fasta	PCDHB3	chr5	141095473	141108827