JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PCDHB3_chr5_141095473_141108827	0/0	c0018	2391	1	0	0	1	0	0	copy fasta	PCDHB3	chr5	141095473	141108827
PCDHB3_chr5_141095473_141108827	0/0	c0019	2391	1	0	1	0	0	0	copy fasta	PCDHB3	chr5	141095473	141108827
PCDHB3_chr5_141095473_141108827	0/0	c0020	2391	1	0	1	0	0	0	copy fasta	PCDHB3	chr5	141095473	141108827
PCDHB3_chr5_141095473_141108827	0/0	c0021	2391	1	0	0	0	0	1	copy fasta	PCDHB3	chr5	141095473	141108827
PCDHB3_chr5_141095473_141108827	0/0	c0022	2391	1	0	0	1	0	0	copy fasta	PCDHB3	chr5	141095473	141108827
PCDHB3_chr5_141095473_141108827	0/0	c0023	2391	1	0	0	0	0	1	copy fasta	PCDHB3	chr5	141095473	141108827
PCDHB3_chr5_141095473_141108827	0/0	c0024	2391	1	1	0	0	0	0	copy fasta	PCDHB3	chr5	141095473	141108827
PCDHB3_chr5_141095473_141108827	0/0	c0025	282	1	1	0	0	0	0	copy fasta	PCDHB3	chr5	141095473	141108827
PCDHB4_chr5_141116818_141130623	1/1	c0001	2388	191	61	28	69	8	23	copy fasta	PCDHB4	chr5	141116818	141130623
PCDHB4_chr5_141116818_141130623	0/0	c0002	2388	116	1	15	80	4	16	copy fasta	PCDHB4	chr5	141116818	141130623
PCDHB4_chr5_141116818_141130623	0/0	c0003	2388	55	11	15	26	1	2	copy fasta	PCDHB4	chr5	141116818	141130623
PCDHB4_chr5_141116818_141130623	0/0	c0004	2388	31	2	2	23	1	3	copy fasta	PCDHB4	chr5	141116818	141130623
PCDHB4_chr5_141116818_141130623	0/0	c0005	2388	8	0	0	7	1	0	copy fasta	PCDHB4	chr5	141116818	141130623
PCDHB4_chr5_141116818_141130623	0/0	c0006	2388	7	0	3	0	0	4	copy fasta	PCDHB4	chr5	141116818	141130623
PCDHB4_chr5_141116818_141130623	0/0	c0007	2388	7	6	1	0	0	0	copy fasta	PCDHB4	chr5	141116818	141130623
PCDHB4_chr5_141116818_141130623	0/0	c0008	2388	6	6	0	0	0	0	copy fasta	PCDHB4	chr5	141116818	141130623
PCDHB4_chr5_141116818_141130623	0/0	c0009	2388	3	3	0	0	0	0	copy fasta	PCDHB4	chr5	141116818	141130623
PCDHB4_chr5_141116818_141130623	0/0	c0010	2388	2	0	0	2	0	0	copy fasta	PCDHB4	chr5	141116818	141130623
PCDHB4_chr5_141116818_141130623	0/0	c0011	2388	2	0	1	1	0	0	copy fasta	PCDHB4	chr5	141116818	141130623
PCDHB4_chr5_141116818_141130623	0/0	c0012	2388	2	2	0	0	0	0	copy fasta	PCDHB4	chr5	141116818	141130623
PCDHB4_chr5_141116818_141130623	0/0	c0013	2388	1	0	0	1	0	0	copy fasta	PCDHB4	chr5	141116818	141130623
PCDHB4_chr5_141116818_141130623	0/0	c0014	2388	1	0	1	0	0	0	copy fasta	PCDHB4	chr5	141116818	141130623
PCDHB4_chr5_141116818_141130623	0/0	c0015	2388	1	0	0	0	1	0	copy fasta	PCDHB4	chr5	141116818	141130623
PCDHB4_chr5_141116818_141130623	0/0	c0016	2388	1	0	0	1	0	0	copy fasta	PCDHB4	chr5	141116818	141130623
PCDHB4_chr5_141116818_141130623	0/0	c0017	2388	1	0	0	1	0	0	copy fasta	PCDHB4	chr5	141116818	141130623
PCDHB4_chr5_141116818_141130623	0/0	c0018	2388	1	1	0	0	0	0	copy fasta	PCDHB4	chr5	141116818	141130623
PCDHB4_chr5_141116818_141130623	0/0	c0019	2388	1	0	1	0	0	0	copy fasta	PCDHB4	chr5	141116818	141130623
PCDHB4_chr5_141116818_141130623	0/0	c0020	2388	1	1	0	0	0	0	copy fasta	PCDHB4	chr5	141116818	141130623
PCDHB4_chr5_141116818_141130623	0/0	c0021	2388	1	1	0	0	0	0	copy fasta	PCDHB4	chr5	141116818	141130623
PCDHB4_chr5_141116818_141130623	0/0	c0022	2388	1	0	1	0	0	0	copy fasta	PCDHB4	chr5	141116818	141130623
PCDHB4_chr5_141116818_141130623	0/0	c0023	2388	1	1	0	0	0	0	copy fasta	PCDHB4	chr5	141116818	141130623
PCDHB4_chr5_141116818_141130623	0/0	c0024	2388	1	0	0	1	0	0	copy fasta	PCDHB4	chr5	141116818	141130623
PCDHB4_chr5_141116818_141130623	0/0	c0025	2388	1	1	0	0	0	0	copy fasta	PCDHB4	chr5	141116818	141130623
PCDHB4_chr5_141116818_141130623	0/0	c0026	2388	1	1	0	0	0	0	copy fasta	PCDHB4	chr5	141116818	141130623
PCDHB5_chr5_141130206_141143615	1/1	c0001	2388	337	47	47	183	14	44	copy fasta	PCDHB5	chr5	141130206	141143615
PCDHB5_chr5_141130206_141143615	0/0	c0002	2388	33	8	12	10	1	2	copy fasta	PCDHB5	chr5	141130206	141143615
PCDHB5_chr5_141130206_141143615	0/0	c0003	2388	21	21	0	0	0	0	copy fasta	PCDHB5	chr5	141130206	141143615
PCDHB5_chr5_141130206_141143615	0/0	c0004	2388	20	3	2	15	0	0	copy fasta	PCDHB5	chr5	141130206	141143615
PCDHB5_chr5_141130206_141143615	0/0	c0005	2388	19	0	5	13	0	1	copy fasta	PCDHB5	chr5	141130206	141143615
PCDHB5_chr5_141130206_141143615	0/0	c0006	2388	4	2	2	0	0	0	copy fasta	PCDHB5	chr5	141130206	141143615
PCDHB5_chr5_141130206_141143615	0/0	c0007	2388	4	4	0	0	0	0	copy fasta	PCDHB5	chr5	141130206	141143615
PCDHB5_chr5_141130206_141143615	0/0	c0008	2388	4	0	2	0	1	1	copy fasta	PCDHB5	chr5	141130206	141143615
PCDHB5_chr5_141130206_141143615	0/0	c0009	2388	4	0	4	0	0	0	copy fasta	PCDHB5	chr5	141130206	141143615
PCDHB5_chr5_141130206_141143615	0/0	c0010	2388	3	0	3	0	0	0	copy fasta	PCDHB5	chr5	141130206	141143615
PCDHB5_chr5_141130206_141143615	0/0	c0011	2388	2	2	0	0	0	0	copy fasta	PCDHB5	chr5	141130206	141143615
PCDHB5_chr5_141130206_141143615	0/0	c0012	2388	2	2	0	0	0	0	copy fasta	PCDHB5	chr5	141130206	141143615
PCDHB5_chr5_141130206_141143615	0/0	c0013	2388	2	2	0	0	0	0	copy fasta	PCDHB5	chr5	141130206	141143615
PCDHB5_chr5_141130206_141143615	0/0	c0014	2388	1	0	1	0	0	0	copy fasta	PCDHB5	chr5	141130206	141143615
PCDHB5_chr5_141130206_141143615	0/0	c0015	2388	1	1	0	0	0	0	copy fasta	PCDHB5	chr5	141130206	141143615
PCDHB5_chr5_141130206_141143615	0/0	c0016	2388	1	1	0	0	0	0	copy fasta	PCDHB5	chr5	141130206	141143615