JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PCDHB5_chr5_141130206_141143615	0/0	c0017	2388	1	1	0	0	0	0	copy fasta	PCDHB5	chr5	141130206	141143615
PCDHB5_chr5_141130206_141143615	0/0	c0018	2388	1	0	1	0	0	0	copy fasta	PCDHB5	chr5	141130206	141143615
PCDHB5_chr5_141130206_141143615	0/0	c0019	2388	1	0	0	1	0	0	copy fasta	PCDHB5	chr5	141130206	141143615
PCDHB5_chr5_141130206_141143615	0/0	c0020	2388	1	0	0	1	0	0	copy fasta	PCDHB5	chr5	141130206	141143615
PCDHB5_chr5_141130206_141143615	0/0	c0021	2388	1	0	0	1	0	0	copy fasta	PCDHB5	chr5	141130206	141143615
PCDHB5_chr5_141130206_141143615	0/0	c0022	2388	1	1	0	0	0	0	copy fasta	PCDHB5	chr5	141130206	141143615
PCDHB5_chr5_141130206_141143615	0/0	c0023	2388	1	0	0	1	0	0	copy fasta	PCDHB5	chr5	141130206	141143615
PCDHB5_chr5_141130206_141143615	0/0	c0024	2388	1	0	1	0	0	0	copy fasta	PCDHB5	chr5	141130206	141143615
PCDHB5_chr5_141130206_141143615	0/0	c0025	2388	1	1	0	0	0	0	copy fasta	PCDHB5	chr5	141130206	141143615
PCDHB5_chr5_141130206_141143615	0/0	c0026	2388	1	1	0	0	0	0	copy fasta	PCDHB5	chr5	141130206	141143615
PCDHB5_chr5_141130206_141143615	0/0	c0027	2388	1	1	0	0	0	0	copy fasta	PCDHB5	chr5	141130206	141143615
PCDHB5_chr5_141130206_141143615	0/0	c0028	2388	1	0	0	1	0	0	copy fasta	PCDHB5	chr5	141130206	141143615
PCDHB6_chr5_141145057_141158287	1/0	c0001	2385	153	33	35	60	6	18	copy fasta	PCDHB6	chr5	141145057	141158287
PCDHB6_chr5_141145057_141158287	0/0	c0002	2385	139	1	15	109	4	10	copy fasta	PCDHB6	chr5	141145057	141158287
PCDHB6_chr5_141145057_141158287	0/1	c0003	2385	44	8	5	22	2	6	copy fasta	PCDHB6	chr5	141145057	141158287
PCDHB6_chr5_141145057_141158287	0/0	c0004	2385	25	21	4	0	0	0	copy fasta	PCDHB6	chr5	141145057	141158287
PCDHB6_chr5_141145057_141158287	0/0	c0005	2385	17	4	4	9	0	0	copy fasta	PCDHB6	chr5	141145057	141158287
PCDHB6_chr5_141145057_141158287	0/0	c0006	2385	13	0	4	4	3	2	copy fasta	PCDHB6	chr5	141145057	141158287
PCDHB6_chr5_141145057_141158287	0/0	c0007	2385	7	7	0	0	0	0	copy fasta	PCDHB6	chr5	141145057	141158287
PCDHB6_chr5_141145057_141158287	0/0	c0008	2385	7	0	0	7	0	0	copy fasta	PCDHB6	chr5	141145057	141158287
PCDHB6_chr5_141145057_141158287	0/0	c0009	2385	5	1	3	0	0	1	copy fasta	PCDHB6	chr5	141145057	141158287
PCDHB6_chr5_141145057_141158287	0/0	c0010	2385	5	0	0	5	0	0	copy fasta	PCDHB6	chr5	141145057	141158287
PCDHB6_chr5_141145057_141158287	0/0	c0011	2385	5	0	0	5	0	0	copy fasta	PCDHB6	chr5	141145057	141158287
PCDHB6_chr5_141145057_141158287	0/0	c0012	2385	4	4	0	0	0	0	copy fasta	PCDHB6	chr5	141145057	141158287
PCDHB6_chr5_141145057_141158287	0/0	c0013	2385	4	0	0	4	0	0	copy fasta	PCDHB6	chr5	141145057	141158287
PCDHB6_chr5_141145057_141158287	0/0	c0014	2385	3	0	0	3	0	0	copy fasta	PCDHB6	chr5	141145057	141158287
PCDHB6_chr5_141145057_141158287	0/0	c0015	2385	3	0	3	0	0	0	copy fasta	PCDHB6	chr5	141145057	141158287
PCDHB6_chr5_141145057_141158287	0/0	c0016	2385	3	3	0	0	0	0	copy fasta	PCDHB6	chr5	141145057	141158287
PCDHB6_chr5_141145057_141158287	0/0	c0017	2385	2	2	0	0	0	0	copy fasta	PCDHB6	chr5	141145057	141158287
PCDHB6_chr5_141145057_141158287	0/0	c0018	2385	2	2	0	0	0	0	copy fasta	PCDHB6	chr5	141145057	141158287
PCDHB6_chr5_141145057_141158287	0/0	c0019	2385	2	2	0	0	0	0	copy fasta	PCDHB6	chr5	141145057	141158287
PCDHB6_chr5_141145057_141158287	0/0	c0020	1594	2	2	0	0	0	0	copy fasta	PCDHB6	chr5	141145057	141158287
PCDHB6_chr5_141145057_141158287	0/0	c0021	2385	2	2	0	0	0	0	copy fasta	PCDHB6	chr5	141145057	141158287
PCDHB6_chr5_141145057_141158287	0/0	c0022	2385	2	0	0	0	0	2	copy fasta	PCDHB6	chr5	141145057	141158287
PCDHB6_chr5_141145057_141158287	0/0	c0023	2385	1	0	0	1	0	0	copy fasta	PCDHB6	chr5	141145057	141158287
PCDHB6_chr5_141145057_141158287	0/0	c0024	2385	1	1	0	0	0	0	copy fasta	PCDHB6	chr5	141145057	141158287
PCDHB6_chr5_141145057_141158287	0/0	c0025	2385	1	0	1	0	0	0	copy fasta	PCDHB6	chr5	141145057	141158287
PCDHB6_chr5_141145057_141158287	0/0	c0026	2385	1	0	0	0	0	1	copy fasta	PCDHB6	chr5	141145057	141158287
PCDHB6_chr5_141145057_141158287	0/0	c0027	2385	1	0	1	0	0	0	copy fasta	PCDHB6	chr5	141145057	141158287
PCDHB6_chr5_141145057_141158287	0/0	c0028	2385	1	0	0	1	0	0	copy fasta	PCDHB6	chr5	141145057	141158287
PCDHB6_chr5_141145057_141158287	0/0	c0029	2385	1	0	1	0	0	0	copy fasta	PCDHB6	chr5	141145057	141158287
PCDHB6_chr5_141145057_141158287	0/0	c0030	2385	1	0	0	1	0	0	copy fasta	PCDHB6	chr5	141145057	141158287
PCDHB6_chr5_141145057_141158287	0/0	c0031	2385	1	0	0	0	0	1	copy fasta	PCDHB6	chr5	141145057	141158287
PCDHB6_chr5_141145057_141158287	0/0	c0032	2385	1	0	0	0	0	1	copy fasta	PCDHB6	chr5	141145057	141158287
PCDHB6_chr5_141145057_141158287	0/0	c0033	2385	1	0	0	0	1	0	copy fasta	PCDHB6	chr5	141145057	141158287
PCDHB6_chr5_141145057_141158287	0/0	c0034	2385	1	0	0	1	0	0	copy fasta	PCDHB6	chr5	141145057	141158287
PCDHB6_chr5_141145057_141158287	0/0	c0035	2385	1	1	0	0	0	0	copy fasta	PCDHB6	chr5	141145057	141158287
PCDHB6_chr5_141145057_141158287	0/0	c0036	2385	1	0	1	0	0	0	copy fasta	PCDHB6	chr5	141145057	141158287
PCDHB6_chr5_141145057_141158287	0/0	c0037	2385	1	0	1	0	0	0	copy fasta	PCDHB6	chr5	141145057	141158287
PCDHB7_chr5_141167644_141181383	0/0	c0001	2382	115	1	18	84	3	9	copy fasta	PCDHB7	chr5	141167644	141181383