JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PCDHB7_chr5_141167644_141181383	0/0	c0002	7584	45	9	6	26	2	2	copy fasta	PCDHB7	chr5	141167644	141181383
PCDHB7_chr5_141167644_141181383	1/0	c0003	2382	43	13	8	16	1	4	copy fasta	PCDHB7	chr5	141167644	141181383
PCDHB7_chr5_141167644_141181383	0/1	c0004	2382	42	2	4	27	2	6	copy fasta	PCDHB7	chr5	141167644	141181383
PCDHB7_chr5_141167644_141181383	0/0	c0005	2382	21	16	5	0	0	0	copy fasta	PCDHB7	chr5	141167644	141181383
PCDHB7_chr5_141167644_141181383	0/0	c0006	2382	18	1	7	4	4	2	copy fasta	PCDHB7	chr5	141167644	141181383
PCDHB7_chr5_141167644_141181383	0/0	c0007	2382	18	5	3	10	0	0	copy fasta	PCDHB7	chr5	141167644	141181383
PCDHB7_chr5_141167644_141181383	0/0	c0008	12786	13	2	3	4	0	4	copy fasta	PCDHB7	chr5	141167644	141181383
PCDHB7_chr5_141167644_141181383	0/0	c0009	17988	9	1	6	2	0	0	copy fasta	PCDHB7	chr5	141167644	141181383
PCDHB7_chr5_141167644_141181383	0/0	c0010	2382	7	7	0	0	0	0	copy fasta	PCDHB7	chr5	141167644	141181383
PCDHB7_chr5_141167644_141181383	0/0	c0011	2382	5	5	0	0	0	0	copy fasta	PCDHB7	chr5	141167644	141181383
PCDHB7_chr5_141167644_141181383	0/0	c0012	2382	5	0	0	5	0	0	copy fasta	PCDHB7	chr5	141167644	141181383
PCDHB7_chr5_141167644_141181383	0/0	c0013	2382	5	3	1	1	0	0	copy fasta	PCDHB7	chr5	141167644	141181383
PCDHB7_chr5_141167644_141181383	0/0	c0014	2382	4	3	1	0	0	0	copy fasta	PCDHB7	chr5	141167644	141181383
PCDHB7_chr5_141167644_141181383	0/0	c0015	2382	4	4	0	0	0	0	copy fasta	PCDHB7	chr5	141167644	141181383
PCDHB7_chr5_141167644_141181383	0/0	c0016	2382	4	3	1	0	0	0	copy fasta	PCDHB7	chr5	141167644	141181383
PCDHB7_chr5_141167644_141181383	0/0	c0017	7584	4	0	1	0	1	2	copy fasta	PCDHB7	chr5	141167644	141181383
PCDHB7_chr5_141167644_141181383	0/0	c0018	2382	4	2	2	0	0	0	copy fasta	PCDHB7	chr5	141167644	141181383
PCDHB7_chr5_141167644_141181383	0/0	c0019	2382	4	4	0	0	0	0	copy fasta	PCDHB7	chr5	141167644	141181383
PCDHB7_chr5_141167644_141181383	0/0	c0020	12786	2	0	0	2	0	0	copy fasta	PCDHB7	chr5	141167644	141181383
PCDHB7_chr5_141167644_141181383	0/0	c0021	2382	2	2	0	0	0	0	copy fasta	PCDHB7	chr5	141167644	141181383
PCDHB7_chr5_141167644_141181383	0/0	c0022	2382	1	0	0	0	0	1	copy fasta	PCDHB7	chr5	141167644	141181383
PCDHB7_chr5_141167644_141181383	0/0	c0023	2382	1	0	1	0	0	0	copy fasta	PCDHB7	chr5	141167644	141181383
PCDHB7_chr5_141167644_141181383	0/0	c0024	2382	1	1	0	0	0	0	copy fasta	PCDHB7	chr5	141167644	141181383
PCDHB7_chr5_141167644_141181383	0/0	c0025	2382	1	1	0	0	0	0	copy fasta	PCDHB7	chr5	141167644	141181383
PCDHB7_chr5_141167644_141181383	0/0	c0026	2382	1	1	0	0	0	0	copy fasta	PCDHB7	chr5	141167644	141181383
PCDHB7_chr5_141167644_141181383	0/0	c0027	2382	1	0	0	1	0	0	copy fasta	PCDHB7	chr5	141167644	141181383
PCDHB7_chr5_141167644_141181383	0/0	c0028	2382	1	0	1	0	0	0	copy fasta	PCDHB7	chr5	141167644	141181383
PCDHB7_chr5_141167644_141181383	0/0	c0029	7584	1	1	0	0	0	0	copy fasta	PCDHB7	chr5	141167644	141181383
PCDHB7_chr5_141167644_141181383	0/0	c0030	2382	1	0	0	1	0	0	copy fasta	PCDHB7	chr5	141167644	141181383
PCDHB7_chr5_141167644_141181383	0/0	c0031	2382	1	0	0	0	0	1	copy fasta	PCDHB7	chr5	141167644	141181383
PCDHB7_chr5_141167644_141181383	0/0	c0032	2382	1	0	0	1	0	0	copy fasta	PCDHB7	chr5	141167644	141181383
PCDHB7_chr5_141167644_141181383	0/0	c0033	2382	1	0	1	0	0	0	copy fasta	PCDHB7	chr5	141167644	141181383
PCDHB7_chr5_141167644_141181383	0/0	c0034	2382	1	1	0	0	0	0	copy fasta	PCDHB7	chr5	141167644	141181383
PCDHB7_chr5_141167644_141181383	0/0	c0035	2382	1	1	0	0	0	0	copy fasta	PCDHB7	chr5	141167644	141181383
PCDHB7_chr5_141167644_141181383	0/0	c0036	2382	1	0	0	1	0	0	copy fasta	PCDHB7	chr5	141167644	141181383
PCDHB7_chr5_141167644_141181383	0/0	c0037	7584	1	0	0	1	0	0	copy fasta	PCDHB7	chr5	141167644	141181383
PCDHB7_chr5_141167644_141181383	0/0	c0038	7584	1	0	0	1	0	0	copy fasta	PCDHB7	chr5	141167644	141181383
PCDHB7_chr5_141167644_141181383	0/0	c0039	2382	1	0	0	1	0	0	copy fasta	PCDHB7	chr5	141167644	141181383
PCDHB7_chr5_141167644_141181383	0/0	c0040	17988	1	0	0	1	0	0	copy fasta	PCDHB7	chr5	141167644	141181383
PCDHB7_chr5_141167644_141181383	0/0	c0041	23189	1	0	1	0	0	0	copy fasta	PCDHB7	chr5	141167644	141181383
PCDHB7_chr5_141167644_141181383	0/0	c0042	12786	1	0	0	0	0	1	copy fasta	PCDHB7	chr5	141167644	141181383
PCDHB7_chr5_141167644_141181383	0/0	c0043	17988	1	0	0	0	0	1	copy fasta	PCDHB7	chr5	141167644	141181383
PCDHB7_chr5_141167644_141181383	0/0	c0044	7584	1	1	0	0	0	0	copy fasta	PCDHB7	chr5	141167644	141181383
PCDHB7_chr5_141167644_141181383	0/0	c0045	17988	1	0	0	0	1	0	copy fasta	PCDHB7	chr5	141167644	141181383
PCDHB7_chr5_141167644_141181383	0/0	c0046	17988	1	0	1	0	0	0	copy fasta	PCDHB7	chr5	141167644	141181383
PCDHB7_chr5_141167644_141181383	0/0	c0047	17988	1	0	0	1	0	0	copy fasta	PCDHB7	chr5	141167644	141181383
PCDHB7_chr5_141167644_141181383	0/0	c0048	12786	1	0	1	0	0	0	copy fasta	PCDHB7	chr5	141167644	141181383
PCDHB7_chr5_141167644_141181383	0/0	c0049	17988	1	0	1	0	0	0	copy fasta	PCDHB7	chr5	141167644	141181383
PCDHB7_chr5_141167644_141181383	0/0	c0050	12786	1	0	0	0	0	1	copy fasta	PCDHB7	chr5	141167644	141181383
PCDHB7_chr5_141167644_141181383	0/0	c0051	12786	1	0	0	0	0	1	copy fasta	PCDHB7	chr5	141167644	141181383