JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PCDHB7_chr5_141167644_141181383	0/0	c0052	7584	1	0	0	1	0	0	copy fasta	PCDHB7	chr5	141167644	141181383
PCDHB7_chr5_141167644_141181383	0/0	c0053	12786	1	0	0	0	0	1	copy fasta	PCDHB7	chr5	141167644	141181383
PCDHB7_chr5_141167644_141181383	0/0	c0054	7584	1	0	0	1	0	0	copy fasta	PCDHB7	chr5	141167644	141181383
PCDHB7_chr5_141167644_141181383	0/0	c0055	17987	1	0	0	0	0	1	copy fasta	PCDHB7	chr5	141167644	141181383
PCDHB7_chr5_141167644_141181383	0/0	c0056	2382	1	0	1	0	0	0	copy fasta	PCDHB7	chr5	141167644	141181383
PCDHB7_chr5_141167644_141181383	0/0	c0057	7584	1	0	0	0	0	1	copy fasta	PCDHB7	chr5	141167644	141181383
PCDHB7_chr5_141167644_141181383	0/0	c0058	7584	1	1	0	0	0	0	copy fasta	PCDHB7	chr5	141167644	141181383
PCDHB7_chr5_141167644_141181383	0/0	c0059	2382	1	1	0	0	0	0	copy fasta	PCDHB7	chr5	141167644	141181383
PCDHB7_chr5_141167644_141181383	0/0	c0060	2382	1	0	0	0	0	1	copy fasta	PCDHB7	chr5	141167644	141181383
PCDHB7_chr5_141167644_141181383	0/0	c0061	7584	1	0	0	0	0	1	copy fasta	PCDHB7	chr5	141167644	141181383
PCDHB7_chr5_141167644_141181383	0/0	c0062	2382	1	1	0	0	0	0	copy fasta	PCDHB7	chr5	141167644	141181383
PCDHB7_chr5_141167644_141181383	0/0	c0063	2382	1	1	0	0	0	0	copy fasta	PCDHB7	chr5	141167644	141181383
PCDHB8_chr5_141172790_141185539	0/0	c0001	2406	112	1	16	89	2	4	copy fasta	PCDHB8	chr5	141172790	141185539
PCDHB8_chr5_141172790_141185539	0/0	c0002	2406	67	16	10	34	2	5	copy fasta	PCDHB8	chr5	141172790	141185539
PCDHB8_chr5_141172790_141185539	1/0	c0003	2406	53	3	18	16	4	11	copy fasta	PCDHB8	chr5	141172790	141185539
PCDHB8_chr5_141172790_141185539	0/1	c0004	2406	43	2	5	30	2	3	copy fasta	PCDHB8	chr5	141172790	141185539
PCDHB8_chr5_141172790_141185539	0/0	c0005	2406	30	5	6	13	4	2	copy fasta	PCDHB8	chr5	141172790	141185539
PCDHB8_chr5_141172790_141185539	0/0	c0006	2406	16	16	0	0	0	0	copy fasta	PCDHB8	chr5	141172790	141185539
PCDHB8_chr5_141172790_141185539	0/0	c0007	2406	10	10	0	0	0	0	copy fasta	PCDHB8	chr5	141172790	141185539
PCDHB8_chr5_141172790_141185539	0/0	c0008	2406	6	0	0	6	0	0	copy fasta	PCDHB8	chr5	141172790	141185539
PCDHB8_chr5_141172790_141185539	0/0	c0009	2406	5	5	0	0	0	0	copy fasta	PCDHB8	chr5	141172790	141185539
PCDHB8_chr5_141172790_141185539	0/0	c0010	2406	5	0	5	0	0	0	copy fasta	PCDHB8	chr5	141172790	141185539
PCDHB8_chr5_141172790_141185539	0/0	c0011	2406	5	4	1	0	0	0	copy fasta	PCDHB8	chr5	141172790	141185539
PCDHB8_chr5_141172790_141185539	0/0	c0012	2406	5	5	0	0	0	0	copy fasta	PCDHB8	chr5	141172790	141185539
PCDHB8_chr5_141172790_141185539	0/0	c0013	2406	4	1	2	0	0	1	copy fasta	PCDHB8	chr5	141172790	141185539
PCDHB8_chr5_141172790_141185539	0/0	c0014	2406	4	3	1	0	0	0	copy fasta	PCDHB8	chr5	141172790	141185539
PCDHB8_chr5_141172790_141185539	0/0	c0015	2406	4	0	0	4	0	0	copy fasta	PCDHB8	chr5	141172790	141185539
PCDHB8_chr5_141172790_141185539	0/0	c0016	2406	4	4	0	0	0	0	copy fasta	PCDHB8	chr5	141172790	141185539
PCDHB8_chr5_141172790_141185539	0/0	c0017	2406	3	0	0	3	0	0	copy fasta	PCDHB8	chr5	141172790	141185539
PCDHB8_chr5_141172790_141185539	0/0	c0018	2406	3	2	1	0	0	0	copy fasta	PCDHB8	chr5	141172790	141185539
PCDHB8_chr5_141172790_141185539	0/0	c0019	2406	2	0	0	0	0	2	copy fasta	PCDHB8	chr5	141172790	141185539
PCDHB8_chr5_141172790_141185539	0/0	c0020	2406	2	2	0	0	0	0	copy fasta	PCDHB8	chr5	141172790	141185539
PCDHB8_chr5_141172790_141185539	0/0	c0021	2406	2	1	1	0	0	0	copy fasta	PCDHB8	chr5	141172790	141185539
PCDHB8_chr5_141172790_141185539	0/0	c0022	2406	2	2	0	0	0	0	copy fasta	PCDHB8	chr5	141172790	141185539
PCDHB8_chr5_141172790_141185539	0/0	c0023	2406	2	2	0	0	0	0	copy fasta	PCDHB8	chr5	141172790	141185539
PCDHB8_chr5_141172790_141185539	0/0	c0024	12810	2	0	2	0	0	0	copy fasta	PCDHB8	chr5	141172790	141185539
PCDHB8_chr5_141172790_141185539	0/0	c0025	2406	2	2	0	0	0	0	copy fasta	PCDHB8	chr5	141172790	141185539
PCDHB8_chr5_141172790_141185539	0/0	c0026	2406	2	0	0	0	1	1	copy fasta	PCDHB8	chr5	141172790	141185539
PCDHB8_chr5_141172790_141185539	0/0	c0027	2406	1	0	1	0	0	0	copy fasta	PCDHB8	chr5	141172790	141185539
PCDHB8_chr5_141172790_141185539	0/0	c0028	2406	1	0	0	1	0	0	copy fasta	PCDHB8	chr5	141172790	141185539
PCDHB8_chr5_141172790_141185539	0/0	c0029	2406	1	0	1	0	0	0	copy fasta	PCDHB8	chr5	141172790	141185539
PCDHB8_chr5_141172790_141185539	0/0	c0030	2406	1	0	0	0	0	1	copy fasta	PCDHB8	chr5	141172790	141185539
PCDHB8_chr5_141172790_141185539	0/0	c0031	2406	1	0	0	1	0	0	copy fasta	PCDHB8	chr5	141172790	141185539
PCDHB8_chr5_141172790_141185539	0/0	c0032	2406	1	0	0	1	0	0	copy fasta	PCDHB8	chr5	141172790	141185539
PCDHB8_chr5_141172790_141185539	0/0	c0033	2406	1	0	0	0	0	1	copy fasta	PCDHB8	chr5	141172790	141185539
PCDHB8_chr5_141172790_141185539	0/0	c0034	2406	1	0	0	0	0	1	copy fasta	PCDHB8	chr5	141172790	141185539
PCDHB8_chr5_141172790_141185539	0/0	c0035	2406	1	1	0	0	0	0	copy fasta	PCDHB8	chr5	141172790	141185539
PCDHB8_chr5_141172790_141185539	0/0	c0036	2406	1	0	0	0	1	0	copy fasta	PCDHB8	chr5	141172790	141185539
PCDHB8_chr5_141172790_141185539	0/0	c0037	12810	1	0	1	0	0	0	copy fasta	PCDHB8	chr5	141172790	141185539
PCDHB8_chr5_141172790_141185539	0/0	c0038	7608	1	0	0	1	0	0	copy fasta	PCDHB8	chr5	141172790	141185539