JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PCDHB8_chr5_141172790_141185539	0/0	c0039	7609	1	0	0	1	0	0	copy fasta	PCDHB8	chr5	141172790	141185539
PCDHB8_chr5_141172790_141185539	0/0	c0040	2406	1	1	0	0	0	0	copy fasta	PCDHB8	chr5	141172790	141185539
PCDHB8_chr5_141172790_141185539	0/0	c0041	2406	1	0	0	1	0	0	copy fasta	PCDHB8	chr5	141172790	141185539
PCDHB8_chr5_141172790_141185539	0/0	c0042	2406	1	0	1	0	0	0	copy fasta	PCDHB8	chr5	141172790	141185539
PCDHB8_chr5_141172790_141185539	0/0	c0043	2406	1	1	0	0	0	0	copy fasta	PCDHB8	chr5	141172790	141185539
PCDHB8_chr5_141172790_141185539	0/0	c0044	2406	1	0	0	1	0	0	copy fasta	PCDHB8	chr5	141172790	141185539
PCDHB8_chr5_141172790_141185539	0/0	c0045	2406	1	1	0	0	0	0	copy fasta	PCDHB8	chr5	141172790	141185539
PCDHB9_chr5_141182161_141196541	0/0	c0000	0	1	0	0	0	0	1	copy fasta	PCDHB9	chr5	141182161	141196541
PCDHB9_chr5_141182161_141196541	0/0	c0001	2394	128	1	20	92	4	11	copy fasta	PCDHB9	chr5	141182161	141196541
PCDHB9_chr5_141182161_141196541	1/0	c0002	2394	121	21	31	48	7	13	copy fasta	PCDHB9	chr5	141182161	141196541
PCDHB9_chr5_141182161_141196541	0/1	c0003	2394	52	9	6	30	2	4	copy fasta	PCDHB9	chr5	141182161	141196541
PCDHB9_chr5_141182161_141196541	0/0	c0004	2394	34	6	9	12	4	3	copy fasta	PCDHB9	chr5	141182161	141196541
PCDHB9_chr5_141182161_141196541	0/0	c0005	2394	18	15	3	0	0	0	copy fasta	PCDHB9	chr5	141182161	141196541
PCDHB9_chr5_141182161_141196541	0/0	c0006	2394	13	0	0	11	0	2	copy fasta	PCDHB9	chr5	141182161	141196541
PCDHB9_chr5_141182161_141196541	0/0	c0007	2394	9	0	0	9	0	0	copy fasta	PCDHB9	chr5	141182161	141196541
PCDHB9_chr5_141182161_141196541	0/0	c0008	2394	6	5	0	1	0	0	copy fasta	PCDHB9	chr5	141182161	141196541
PCDHB9_chr5_141182161_141196541	0/0	c0009	2394	6	6	0	0	0	0	copy fasta	PCDHB9	chr5	141182161	141196541
PCDHB9_chr5_141182161_141196541	0/0	c0010	2394	5	5	0	0	0	0	copy fasta	PCDHB9	chr5	141182161	141196541
PCDHB9_chr5_141182161_141196541	0/0	c0011	2394	5	0	0	5	0	0	copy fasta	PCDHB9	chr5	141182161	141196541
PCDHB9_chr5_141182161_141196541	0/0	c0012	2394	4	4	0	0	0	0	copy fasta	PCDHB9	chr5	141182161	141196541
PCDHB9_chr5_141182161_141196541	0/0	c0013	2394	4	4	0	0	0	0	copy fasta	PCDHB9	chr5	141182161	141196541
PCDHB9_chr5_141182161_141196541	0/0	c0014	2394	4	3	1	0	0	0	copy fasta	PCDHB9	chr5	141182161	141196541
PCDHB9_chr5_141182161_141196541	0/0	c0015	2394	4	3	1	0	0	0	copy fasta	PCDHB9	chr5	141182161	141196541
PCDHB9_chr5_141182161_141196541	0/0	c0016	2394	3	1	2	0	0	0	copy fasta	PCDHB9	chr5	141182161	141196541
PCDHB9_chr5_141182161_141196541	0/0	c0017	2394	3	0	3	0	0	0	copy fasta	PCDHB9	chr5	141182161	141196541
PCDHB9_chr5_141182161_141196541	0/0	c0018	2394	2	0	2	0	0	0	copy fasta	PCDHB9	chr5	141182161	141196541
PCDHB9_chr5_141182161_141196541	0/0	c0019	2394	2	2	0	0	0	0	copy fasta	PCDHB9	chr5	141182161	141196541
PCDHB9_chr5_141182161_141196541	0/0	c0020	2394	2	0	0	2	0	0	copy fasta	PCDHB9	chr5	141182161	141196541
PCDHB9_chr5_141182161_141196541	0/0	c0021	2394	2	0	0	2	0	0	copy fasta	PCDHB9	chr5	141182161	141196541
PCDHB9_chr5_141182161_141196541	0/0	c0022	2394	2	0	0	2	0	0	copy fasta	PCDHB9	chr5	141182161	141196541
PCDHB9_chr5_141182161_141196541	0/0	c0023	2394	2	0	2	0	0	0	copy fasta	PCDHB9	chr5	141182161	141196541
PCDHB9_chr5_141182161_141196541	0/0	c0024	60	1	0	0	1	0	0	copy fasta	PCDHB9	chr5	141182161	141196541
PCDHB9_chr5_141182161_141196541	0/0	c0025	2394	1	1	0	0	0	0	copy fasta	PCDHB9	chr5	141182161	141196541
PCDHB9_chr5_141182161_141196541	0/0	c0026	2394	1	0	1	0	0	0	copy fasta	PCDHB9	chr5	141182161	141196541
PCDHB9_chr5_141182161_141196541	0/0	c0027	2394	1	1	0	0	0	0	copy fasta	PCDHB9	chr5	141182161	141196541
PCDHB9_chr5_141182161_141196541	0/0	c0028	2394	1	0	0	1	0	0	copy fasta	PCDHB9	chr5	141182161	141196541
PCDHB9_chr5_141182161_141196541	0/0	c0029	2394	1	1	0	0	0	0	copy fasta	PCDHB9	chr5	141182161	141196541
PCDHB9_chr5_141182161_141196541	0/0	c0030	2394	1	1	0	0	0	0	copy fasta	PCDHB9	chr5	141182161	141196541
PCDHB9_chr5_141182161_141196541	0/0	c0031	2394	1	0	0	0	1	0	copy fasta	PCDHB9	chr5	141182161	141196541
PCDHB9_chr5_141182161_141196541	0/0	c0032	1241	1	1	0	0	0	0	copy fasta	PCDHB9	chr5	141182161	141196541
PCDHB9_chr5_141182161_141196541	0/0	c0033	2394	1	1	0	0	0	0	copy fasta	PCDHB9	chr5	141182161	141196541
PCDHB9_chr5_141182161_141196541	0/0	c0034	2394	1	1	0	0	0	0	copy fasta	PCDHB9	chr5	141182161	141196541
PCDHB9_chr5_141182161_141196541	0/0	c0035	2394	1	0	0	1	0	0	copy fasta	PCDHB9	chr5	141182161	141196541
PCDHB9_chr5_141182161_141196541	0/0	c0036	2394	1	0	0	0	0	1	copy fasta	PCDHB9	chr5	141182161	141196541
PCDHB9_chr5_141182161_141196541	0/0	c0037	2394	1	0	0	1	0	0	copy fasta	PCDHB9	chr5	141182161	141196541
PCDHB9_chr5_141182161_141196541	0/0	c0038	2394	1	0	0	0	0	1	copy fasta	PCDHB9	chr5	141182161	141196541
PCDHB9_chr5_141182161_141196541	0/0	c0039	2394	1	0	1	0	0	0	copy fasta	PCDHB9	chr5	141182161	141196541
PCDHB9_chr5_141182161_141196541	0/0	c0040	2394	1	1	0	0	0	0	copy fasta	PCDHB9	chr5	141182161	141196541
PCDHB9_chr5_141182161_141196541	0/0	c0041	2394	1	1	0	0	0	0	copy fasta	PCDHB9	chr5	141182161	141196541
PCDHB9_chr5_141182161_141196541	0/0	c0042	2394	1	0	0	1	0	0	copy fasta	PCDHB9	chr5	141182161	141196541