JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PCDHGA11_chr5_141416051_141517975	0/0	c0022	2808	1	0	0	1	0	0	copy fasta	PCDHGA11	chr5	141416051	141517975
PCDHGA11_chr5_141416051_141517975	0/0	c0023	2808	1	1	0	0	0	0	copy fasta	PCDHGA11	chr5	141416051	141517975
PCDHGA11_chr5_141416051_141517975	0/0	c0024	2808	1	0	0	1	0	0	copy fasta	PCDHGA11	chr5	141416051	141517975
PCDHGA12_chr5_141425507_141517975	1/1	c0001	2799	250	64	52	97	10	25	copy fasta	PCDHGA12	chr5	141425507	141517975
PCDHGA12_chr5_141425507_141517975	0/0	c0002	2799	29	0	10	18	1	0	copy fasta	PCDHGA12	chr5	141425507	141517975
PCDHGA12_chr5_141425507_141517975	0/0	c0003	2799	10	8	0	0	1	1	copy fasta	PCDHGA12	chr5	141425507	141517975
PCDHGA12_chr5_141425507_141517975	0/0	c0004	2799	4	0	4	0	0	0	copy fasta	PCDHGA12	chr5	141425507	141517975
PCDHGA12_chr5_141425507_141517975	0/0	c0005	2799	3	3	0	0	0	0	copy fasta	PCDHGA12	chr5	141425507	141517975
PCDHGA12_chr5_141425507_141517975	0/0	c0006	2799	3	3	0	0	0	0	copy fasta	PCDHGA12	chr5	141425507	141517975
PCDHGA12_chr5_141425507_141517975	0/0	c0007	2799	2	2	0	0	0	0	copy fasta	PCDHGA12	chr5	141425507	141517975
PCDHGA12_chr5_141425507_141517975	0/0	c0008	2799	2	2	0	0	0	0	copy fasta	PCDHGA12	chr5	141425507	141517975
PCDHGA12_chr5_141425507_141517975	0/0	c0009	2799	2	2	0	0	0	0	copy fasta	PCDHGA12	chr5	141425507	141517975
PCDHGA12_chr5_141425507_141517975	0/0	c0010	2799	1	0	0	1	0	0	copy fasta	PCDHGA12	chr5	141425507	141517975
PCDHGA12_chr5_141425507_141517975	0/0	c0011	2799	1	0	0	0	0	1	copy fasta	PCDHGA12	chr5	141425507	141517975
PCDHGA12_chr5_141425507_141517975	0/0	c0012	2799	1	0	0	1	0	0	copy fasta	PCDHGA12	chr5	141425507	141517975
PCDHGA12_chr5_141425507_141517975	0/0	c0013	2799	1	1	0	0	0	0	copy fasta	PCDHGA12	chr5	141425507	141517975
PCDHGA12_chr5_141425507_141517975	0/0	c0014	2799	1	1	0	0	0	0	copy fasta	PCDHGA12	chr5	141425507	141517975
PCDHGA12_chr5_141425507_141517975	0/0	c0015	2799	1	0	1	0	0	0	copy fasta	PCDHGA12	chr5	141425507	141517975
PCDHGA12_chr5_141425507_141517975	0/0	c0016	2799	1	1	0	0	0	0	copy fasta	PCDHGA12	chr5	141425507	141517975
PCDHGA12_chr5_141425507_141517975	0/0	c0017	2799	1	0	0	0	0	1	copy fasta	PCDHGA12	chr5	141425507	141517975
PCDHGA12_chr5_141425507_141517975	0/0	c0018	2799	1	0	0	1	0	0	copy fasta	PCDHGA12	chr5	141425507	141517975
PCDHGA12_chr5_141425507_141517975	0/0	c0019	2799	1	1	0	0	0	0	copy fasta	PCDHGA12	chr5	141425507	141517975
PCDHGA12_chr5_141425507_141517975	0/0	c0020	2799	1	1	0	0	0	0	copy fasta	PCDHGA12	chr5	141425507	141517975
PCDHGA12_chr5_141425507_141517975	0/0	c0021	2799	1	1	0	0	0	0	copy fasta	PCDHGA12	chr5	141425507	141517975
PCDHGA12_chr5_141425507_141517975	0/0	c0022	2799	1	0	1	0	0	0	copy fasta	PCDHGA12	chr5	141425507	141517975
PCDHGA1_chr5_141325514_141517975	0/0	c0001	2796	137	36	33	44	9	15	copy fasta	PCDHGA1	chr5	141325514	141517975
PCDHGA1_chr5_141325514_141517975	0/0	c0002	2796	36	12	1	21	1	1	copy fasta	PCDHGA1	chr5	141325514	141517975
PCDHGA1_chr5_141325514_141517975	1/0	c0003	2796	25	6	0	17	1	0	copy fasta	PCDHGA1	chr5	141325514	141517975
PCDHGA1_chr5_141325514_141517975	0/1	c0004	2796	22	7	6	2	2	4	copy fasta	PCDHGA1	chr5	141325514	141517975
PCDHGA1_chr5_141325514_141517975	0/0	c0005	2796	10	0	2	1	1	6	copy fasta	PCDHGA1	chr5	141325514	141517975
PCDHGA1_chr5_141325514_141517975	0/0	c0006	2796	7	6	1	0	0	0	copy fasta	PCDHGA1	chr5	141325514	141517975
PCDHGA1_chr5_141325514_141517975	0/0	c0007	2796	6	0	6	0	0	0	copy fasta	PCDHGA1	chr5	141325514	141517975
PCDHGA1_chr5_141325514_141517975	0/0	c0008	2796	5	1	4	0	0	0	copy fasta	PCDHGA1	chr5	141325514	141517975
PCDHGA1_chr5_141325514_141517975	0/0	c0009	2796	4	4	0	0	0	0	copy fasta	PCDHGA1	chr5	141325514	141517975
PCDHGA1_chr5_141325514_141517975	0/0	c0010	2796	3	0	0	3	0	0	copy fasta	PCDHGA1	chr5	141325514	141517975
PCDHGA1_chr5_141325514_141517975	0/0	c0011	2796	2	1	1	0	0	0	copy fasta	PCDHGA1	chr5	141325514	141517975
PCDHGA1_chr5_141325514_141517975	0/0	c0012	2796	2	2	0	0	0	0	copy fasta	PCDHGA1	chr5	141325514	141517975
PCDHGA1_chr5_141325514_141517975	0/0	c0013	2796	1	1	0	0	0	0	copy fasta	PCDHGA1	chr5	141325514	141517975
PCDHGA1_chr5_141325514_141517975	0/0	c0014	2796	1	1	0	0	0	0	copy fasta	PCDHGA1	chr5	141325514	141517975
PCDHGA1_chr5_141325514_141517975	0/0	c0015	2796	1	1	0	0	0	0	copy fasta	PCDHGA1	chr5	141325514	141517975
PCDHGA1_chr5_141325514_141517975	0/0	c0016	2796	1	0	0	1	0	0	copy fasta	PCDHGA1	chr5	141325514	141517975
PCDHGA1_chr5_141325514_141517975	0/0	c0017	2796	1	1	0	0	0	0	copy fasta	PCDHGA1	chr5	141325514	141517975
PCDHGA1_chr5_141325514_141517975	0/0	c0018	2796	1	0	0	1	0	0	copy fasta	PCDHGA1	chr5	141325514	141517975
PCDHGA1_chr5_141325514_141517975	0/0	c0019	2796	1	1	0	0	0	0	copy fasta	PCDHGA1	chr5	141325514	141517975
PCDHGA1_chr5_141325514_141517975	0/0	c0020	2796	1	1	0	0	0	0	copy fasta	PCDHGA1	chr5	141325514	141517975
PCDHGA1_chr5_141325514_141517975	0/0	c0021	2796	1	1	0	0	0	0	copy fasta	PCDHGA1	chr5	141325514	141517975
PCDHGA2_chr5_141333760_141517975	1/1	c0001	2799	125	49	22	35	6	11	copy fasta	PCDHGA2	chr5	141333760	141517975
PCDHGA2_chr5_141333760_141517975	0/0	c0002	2799	62	4	9	38	3	8	copy fasta	PCDHGA2	chr5	141333760	141517975
PCDHGA2_chr5_141333760_141517975	0/0	c0003	2799	26	6	7	11	1	1	copy fasta	PCDHGA2	chr5	141333760	141517975
PCDHGA2_chr5_141333760_141517975	0/0	c0004	2799	20	2	6	8	3	1	copy fasta	PCDHGA2	chr5	141333760	141517975