JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PCDHGA2_chr5_141333760_141517975	0/0	c0005	2799	7	6	1	0	0	0	copy fasta	PCDHGA2	chr5	141333760	141517975
PCDHGA2_chr5_141333760_141517975	0/0	c0006	2799	6	5	1	0	0	0	copy fasta	PCDHGA2	chr5	141333760	141517975
PCDHGA2_chr5_141333760_141517975	0/0	c0007	2799	4	0	0	0	0	4	copy fasta	PCDHGA2	chr5	141333760	141517975
PCDHGA2_chr5_141333760_141517975	0/0	c0008	2799	4	1	3	0	0	0	copy fasta	PCDHGA2	chr5	141333760	141517975
PCDHGA2_chr5_141333760_141517975	0/0	c0009	2799	2	0	0	2	0	0	copy fasta	PCDHGA2	chr5	141333760	141517975
PCDHGA2_chr5_141333760_141517975	0/0	c0010	2799	2	2	0	0	0	0	copy fasta	PCDHGA2	chr5	141333760	141517975
PCDHGA2_chr5_141333760_141517975	0/0	c0011	2799	2	2	0	0	0	0	copy fasta	PCDHGA2	chr5	141333760	141517975
PCDHGA2_chr5_141333760_141517975	0/0	c0012	2799	2	2	0	0	0	0	copy fasta	PCDHGA2	chr5	141333760	141517975
PCDHGA2_chr5_141333760_141517975	0/0	c0013	2799	1	1	0	0	0	0	copy fasta	PCDHGA2	chr5	141333760	141517975
PCDHGA2_chr5_141333760_141517975	0/0	c0014	2799	1	0	0	1	0	0	copy fasta	PCDHGA2	chr5	141333760	141517975
PCDHGA2_chr5_141333760_141517975	0/0	c0015	2799	1	0	1	0	0	0	copy fasta	PCDHGA2	chr5	141333760	141517975
PCDHGA2_chr5_141333760_141517975	0/0	c0016	2799	1	1	0	0	0	0	copy fasta	PCDHGA2	chr5	141333760	141517975
PCDHGA2_chr5_141333760_141517975	0/0	c0017	2799	1	0	0	1	0	0	copy fasta	PCDHGA2	chr5	141333760	141517975
PCDHGA2_chr5_141333760_141517975	0/0	c0018	2799	1	1	0	0	0	0	copy fasta	PCDHGA2	chr5	141333760	141517975
PCDHGA2_chr5_141333760_141517975	0/0	c0019	2799	1	1	0	0	0	0	copy fasta	PCDHGA2	chr5	141333760	141517975
PCDHGA2_chr5_141333760_141517975	0/0	c0020	2799	1	0	0	0	0	1	copy fasta	PCDHGA2	chr5	141333760	141517975
PCDHGA2_chr5_141333760_141517975	0/0	c0021	2799	1	0	0	0	1	0	copy fasta	PCDHGA2	chr5	141333760	141517975
PCDHGA2_chr5_141333760_141517975	0/0	c0022	2799	1	1	0	0	0	0	copy fasta	PCDHGA2	chr5	141333760	141517975
PCDHGA3_chr5_141338829_141517975	0/0	c0001	2799	102	25	23	37	6	11	copy fasta	PCDHGA3	chr5	141338829	141517975
PCDHGA3_chr5_141338829_141517975	1/0	c0002	2799	77	16	13	36	2	9	copy fasta	PCDHGA3	chr5	141338829	141517975
PCDHGA3_chr5_141338829_141517975	0/1	c0003	2799	25	12	6	0	4	2	copy fasta	PCDHGA3	chr5	141338829	141517975
PCDHGA3_chr5_141338829_141517975	0/0	c0004	2799	13	0	0	13	0	0	copy fasta	PCDHGA3	chr5	141338829	141517975
PCDHGA3_chr5_141338829_141517975	0/0	c0005	2799	12	10	2	0	0	0	copy fasta	PCDHGA3	chr5	141338829	141517975
PCDHGA3_chr5_141338829_141517975	0/0	c0006	2799	9	0	2	7	0	0	copy fasta	PCDHGA3	chr5	141338829	141517975
PCDHGA3_chr5_141338829_141517975	0/0	c0007	2799	8	6	0	0	1	1	copy fasta	PCDHGA3	chr5	141338829	141517975
PCDHGA3_chr5_141338829_141517975	0/0	c0008	2799	6	1	4	0	1	0	copy fasta	PCDHGA3	chr5	141338829	141517975
PCDHGA3_chr5_141338829_141517975	0/0	c0009	2799	4	4	0	0	0	0	copy fasta	PCDHGA3	chr5	141338829	141517975
PCDHGA3_chr5_141338829_141517975	0/0	c0010	2799	3	2	1	0	0	0	copy fasta	PCDHGA3	chr5	141338829	141517975
PCDHGA3_chr5_141338829_141517975	0/0	c0011	2799	2	2	0	0	0	0	copy fasta	PCDHGA3	chr5	141338829	141517975
PCDHGA3_chr5_141338829_141517975	0/0	c0012	2799	2	2	0	0	0	0	copy fasta	PCDHGA3	chr5	141338829	141517975
PCDHGA3_chr5_141338829_141517975	0/0	c0013	2799	1	0	0	0	0	1	copy fasta	PCDHGA3	chr5	141338829	141517975
PCDHGA3_chr5_141338829_141517975	0/0	c0014	2799	1	0	0	1	0	0	copy fasta	PCDHGA3	chr5	141338829	141517975
PCDHGA3_chr5_141338829_141517975	0/0	c0015	2799	1	1	0	0	0	0	copy fasta	PCDHGA3	chr5	141338829	141517975
PCDHGA3_chr5_141338829_141517975	0/0	c0016	2799	1	0	1	0	0	0	copy fasta	PCDHGA3	chr5	141338829	141517975
PCDHGA3_chr5_141338829_141517975	0/0	c0017	2799	1	1	0	0	0	0	copy fasta	PCDHGA3	chr5	141338829	141517975
PCDHGA3_chr5_141338829_141517975	0/0	c0018	2799	1	1	0	0	0	0	copy fasta	PCDHGA3	chr5	141338829	141517975
PCDHGA3_chr5_141338829_141517975	0/0	c0019	2799	1	1	0	0	0	0	copy fasta	PCDHGA3	chr5	141338829	141517975
PCDHGA4_chr5_141350021_141517975	1/0	c0001	2889	182	37	43	77	8	16	copy fasta	PCDHGA4	chr5	141350021	141517975
PCDHGA4_chr5_141350021_141517975	0/1	c0002	2889	40	16	8	7	5	3	copy fasta	PCDHGA4	chr5	141350021	141517975
PCDHGA4_chr5_141350021_141517975	0/0	c0003	2889	14	0	1	5	1	7	copy fasta	PCDHGA4	chr5	141350021	141517975
PCDHGA4_chr5_141350021_141517975	0/0	c0004	2889	12	10	2	0	0	0	copy fasta	PCDHGA4	chr5	141350021	141517975
PCDHGA4_chr5_141350021_141517975	0/0	c0005	2889	5	4	1	0	0	0	copy fasta	PCDHGA4	chr5	141350021	141517975
PCDHGA4_chr5_141350021_141517975	0/0	c0006	2889	4	4	0	0	0	0	copy fasta	PCDHGA4	chr5	141350021	141517975
PCDHGA4_chr5_141350021_141517975	0/0	c0007	2889	3	3	0	0	0	0	copy fasta	PCDHGA4	chr5	141350021	141517975
PCDHGA4_chr5_141350021_141517975	0/0	c0008	2889	3	0	0	3	0	0	copy fasta	PCDHGA4	chr5	141350021	141517975
PCDHGA4_chr5_141350021_141517975	0/0	c0009	2889	2	2	0	0	0	0	copy fasta	PCDHGA4	chr5	141350021	141517975
PCDHGA4_chr5_141350021_141517975	0/0	c0010	2889	1	0	0	1	0	0	copy fasta	PCDHGA4	chr5	141350021	141517975
PCDHGA4_chr5_141350021_141517975	0/0	c0011	2889	1	1	0	0	0	0	copy fasta	PCDHGA4	chr5	141350021	141517975
PCDHGA4_chr5_141350021_141517975	0/0	c0012	2889	1	0	1	0	0	0	copy fasta	PCDHGA4	chr5	141350021	141517975
PCDHGA4_chr5_141350021_141517975	0/0	c0013	2889	1	1	0	0	0	0	copy fasta	PCDHGA4	chr5	141350021	141517975