JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PCDHGA4_chr5_141350021_141517975	0/0	c0014	2889	1	0	0	1	0	0	copy fasta	PCDHGA4	chr5	141350021	141517975
PCDHGA4_chr5_141350021_141517975	0/0	c0015	2889	1	1	0	0	0	0	copy fasta	PCDHGA4	chr5	141350021	141517975
PCDHGA4_chr5_141350021_141517975	0/0	c0016	2889	1	1	0	0	0	0	copy fasta	PCDHGA4	chr5	141350021	141517975
PCDHGA4_chr5_141350021_141517975	0/0	c0017	2889	1	1	0	0	0	0	copy fasta	PCDHGA4	chr5	141350021	141517975
PCDHGA4_chr5_141350021_141517975	0/0	c0018	2889	1	1	0	0	0	0	copy fasta	PCDHGA4	chr5	141350021	141517975
PCDHGA5_chr5_141359162_141517975	1/0	c0001	2796	213	40	45	96	8	23	copy fasta	PCDHGA5	chr5	141359162	141517975
PCDHGA5_chr5_141359162_141517975	0/1	c0002	2796	21	8	6	0	4	2	copy fasta	PCDHGA5	chr5	141359162	141517975
PCDHGA5_chr5_141359162_141517975	0/0	c0003	2796	14	14	0	0	0	0	copy fasta	PCDHGA5	chr5	141359162	141517975
PCDHGA5_chr5_141359162_141517975	0/0	c0004	2796	12	10	2	0	0	0	copy fasta	PCDHGA5	chr5	141359162	141517975
PCDHGA5_chr5_141359162_141517975	0/0	c0005	2796	8	0	2	6	0	0	copy fasta	PCDHGA5	chr5	141359162	141517975
PCDHGA5_chr5_141359162_141517975	0/0	c0006	2796	3	1	0	0	1	1	copy fasta	PCDHGA5	chr5	141359162	141517975
PCDHGA5_chr5_141359162_141517975	0/0	c0007	2796	3	3	0	0	0	0	copy fasta	PCDHGA5	chr5	141359162	141517975
PCDHGA5_chr5_141359162_141517975	0/0	c0008	2796	2	2	0	0	0	0	copy fasta	PCDHGA5	chr5	141359162	141517975
PCDHGA5_chr5_141359162_141517975	0/0	c0009	2796	2	2	0	0	0	0	copy fasta	PCDHGA5	chr5	141359162	141517975
PCDHGA5_chr5_141359162_141517975	0/0	c0010	2796	2	2	0	0	0	0	copy fasta	PCDHGA5	chr5	141359162	141517975
PCDHGA5_chr5_141359162_141517975	0/0	c0011	2796	2	0	0	2	0	0	copy fasta	PCDHGA5	chr5	141359162	141517975
PCDHGA5_chr5_141359162_141517975	0/0	c0012	2796	1	0	0	1	0	0	copy fasta	PCDHGA5	chr5	141359162	141517975
PCDHGA5_chr5_141359162_141517975	0/0	c0013	2796	1	1	0	0	0	0	copy fasta	PCDHGA5	chr5	141359162	141517975
PCDHGA5_chr5_141359162_141517975	0/0	c0014	2796	1	0	0	0	1	0	copy fasta	PCDHGA5	chr5	141359162	141517975
PCDHGA5_chr5_141359162_141517975	0/0	c0015	2796	1	0	1	0	0	0	copy fasta	PCDHGA5	chr5	141359162	141517975
PCDHGA5_chr5_141359162_141517975	0/0	c0016	2796	1	0	0	1	0	0	copy fasta	PCDHGA5	chr5	141359162	141517975
PCDHGA5_chr5_141359162_141517975	0/0	c0017	2796	1	0	0	1	0	0	copy fasta	PCDHGA5	chr5	141359162	141517975
PCDHGA5_chr5_141359162_141517975	0/0	c0018	2796	1	1	0	0	0	0	copy fasta	PCDHGA5	chr5	141359162	141517975
PCDHGA5_chr5_141359162_141517975	0/0	c0019	2796	1	1	0	0	0	0	copy fasta	PCDHGA5	chr5	141359162	141517975
PCDHGA5_chr5_141359162_141517975	0/0	c0020	2796	1	0	0	1	0	0	copy fasta	PCDHGA5	chr5	141359162	141517975
PCDHGA5_chr5_141359162_141517975	0/0	c0021	2796	1	1	0	0	0	0	copy fasta	PCDHGA5	chr5	141359162	141517975
PCDHGA6_chr5_141368891_141517975	1/0	c0001	2799	209	44	39	100	6	19	copy fasta	PCDHGA6	chr5	141368891	141517975
PCDHGA6_chr5_141368891_141517975	0/1	c0002	2799	21	8	6	0	4	2	copy fasta	PCDHGA6	chr5	141368891	141517975
PCDHGA6_chr5_141368891_141517975	0/0	c0003	2799	14	5	2	6	1	0	copy fasta	PCDHGA6	chr5	141368891	141517975
PCDHGA6_chr5_141368891_141517975	0/0	c0004	2799	7	7	0	0	0	0	copy fasta	PCDHGA6	chr5	141368891	141517975
PCDHGA6_chr5_141368891_141517975	0/0	c0005	2799	5	0	0	5	0	0	copy fasta	PCDHGA6	chr5	141368891	141517975
PCDHGA6_chr5_141368891_141517975	0/0	c0006	2799	4	4	0	0	0	0	copy fasta	PCDHGA6	chr5	141368891	141517975
PCDHGA6_chr5_141368891_141517975	0/0	c0007	2799	3	2	1	0	0	0	copy fasta	PCDHGA6	chr5	141368891	141517975
PCDHGA6_chr5_141368891_141517975	0/0	c0008	2799	2	1	0	0	0	1	copy fasta	PCDHGA6	chr5	141368891	141517975
PCDHGA6_chr5_141368891_141517975	0/0	c0009	2799	2	2	0	0	0	0	copy fasta	PCDHGA6	chr5	141368891	141517975
PCDHGA6_chr5_141368891_141517975	0/0	c0010	2799	2	0	0	0	0	2	copy fasta	PCDHGA6	chr5	141368891	141517975
PCDHGA6_chr5_141368891_141517975	0/0	c0011	2799	2	2	0	0	0	0	copy fasta	PCDHGA6	chr5	141368891	141517975
PCDHGA6_chr5_141368891_141517975	0/0	c0012	2799	2	2	0	0	0	0	copy fasta	PCDHGA6	chr5	141368891	141517975
PCDHGA6_chr5_141368891_141517975	0/0	c0013	2799	2	2	0	0	0	0	copy fasta	PCDHGA6	chr5	141368891	141517975
PCDHGA6_chr5_141368891_141517975	0/0	c0014	2799	2	0	1	0	1	0	copy fasta	PCDHGA6	chr5	141368891	141517975
PCDHGA6_chr5_141368891_141517975	0/0	c0015	2799	1	0	0	1	0	0	copy fasta	PCDHGA6	chr5	141368891	141517975
PCDHGA6_chr5_141368891_141517975	0/0	c0016	2799	1	0	1	0	0	0	copy fasta	PCDHGA6	chr5	141368891	141517975
PCDHGA6_chr5_141368891_141517975	0/0	c0017	2799	1	0	0	0	1	0	copy fasta	PCDHGA6	chr5	141368891	141517975
PCDHGA6_chr5_141368891_141517975	0/0	c0018	2799	1	0	0	1	0	0	copy fasta	PCDHGA6	chr5	141368891	141517975
PCDHGA6_chr5_141368891_141517975	0/0	c0019	2799	1	1	0	0	0	0	copy fasta	PCDHGA6	chr5	141368891	141517975
PCDHGA6_chr5_141368891_141517975	0/0	c0020	2799	1	0	0	0	1	0	copy fasta	PCDHGA6	chr5	141368891	141517975
PCDHGA6_chr5_141368891_141517975	0/0	c0021	2799	1	1	0	0	0	0	copy fasta	PCDHGA6	chr5	141368891	141517975
PCDHGA6_chr5_141368891_141517975	0/0	c0022	2799	1	1	0	0	0	0	copy fasta	PCDHGA6	chr5	141368891	141517975
PCDHGA6_chr5_141368891_141517975	0/0	c0023	2799	1	1	0	0	0	0	copy fasta	PCDHGA6	chr5	141368891	141517975
PCDHGA6_chr5_141368891_141517975	0/0	c0024	2799	1	1	0	0	0	0	copy fasta	PCDHGA6	chr5	141368891	141517975