JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ARHGEF10_chr8_1818926_1963641	0/1	c0002	4035	23	9	3	7	0	3	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	c0003	4035	20	4	8	2	1	5	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	c0004	4035	14	1	1	9	0	3	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	c0005	4035	11	5	3	3	0	0	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	c0006	4035	9	0	3	5	1	0	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	c0007	4035	9	5	1	1	2	0	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	c0008	4035	9	0	0	6	3	0	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	c0009	4035	9	1	3	2	0	3	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	c0010	4035	7	0	0	7	0	0	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	c0011	4035	6	0	3	3	0	0	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	c0012	4035	6	3	2	1	0	0	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	c0013	4035	5	0	2	1	0	2	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	c0014	4035	5	0	0	5	0	0	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	c0015	4035	5	0	0	5	0	0	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	c0016	4035	5	1	1	2	0	1	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	c0017	4035	5	0	1	1	1	2	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	c0018	4035	5	0	1	2	1	1	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	c0019	4035	4	0	4	0	0	0	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	c0020	4035	4	1	1	2	0	0	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	c0021	4035	4	1	0	2	0	1	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	c0022	4035	3	0	1	2	0	0	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	c0023	4035	3	3	0	0	0	0	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	c0024	4035	3	1	0	1	0	1	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	c0025	4035	3	0	2	1	0	0	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	c0026	4035	3	1	1	1	0	0	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	c0027	4035	2	0	0	1	0	1	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	c0028	4035	2	0	1	1	0	0	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	c0029	4035	2	2	0	0	0	0	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	c0030	4035	2	0	0	2	0	0	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	c0031	4035	2	0	0	2	0	0	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	c0032	4035	2	0	0	2	0	0	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	c0033	4035	2	0	0	2	0	0	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	c0034	4035	2	0	0	2	0	0	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	c0035	4035	2	0	0	1	0	1	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	c0036	4035	2	0	0	1	1	0	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	c0037	4035	2	0	0	2	0	0	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	c0038	4035	2	1	1	0	0	0	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	c0039	4035	2	0	2	0	0	0	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	c0040	4035	2	2	0	0	0	0	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	c0041	4035	2	1	0	1	0	0	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	c0042	4035	2	0	0	1	1	0	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	c0043	4035	2	0	0	2	0	0	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	c0044	4035	2	1	1	0	0	0	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	c0045	4035	2	0	1	0	1	0	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	c0046	4035	2	2	0	0	0	0	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	c0047	4035	2	2	0	0	0	0	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	c0048	4035	2	0	0	2	0	0	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	c0049	4035	2	0	2	0	0	0	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	c0050	4035	2	0	0	2	0	0	copy fasta	ARHGEF10	chr8	1818926	1963641
ARHGEF10_chr8_1818926_1963641	0/0	c0051	4035	2	0	0	1	0	1	copy fasta	ARHGEF10	chr8	1818926	1963641