JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PCDHGA6_chr5_141368891_141517975	0/0	c0025	2799	1	0	0	0	0	1	copy fasta	PCDHGA6	chr5	141368891	141517975
PCDHGA6_chr5_141368891_141517975	0/0	c0026	2799	1	1	0	0	0	0	copy fasta	PCDHGA6	chr5	141368891	141517975
PCDHGA6_chr5_141368891_141517975	0/0	c0027	2799	1	0	0	0	0	1	copy fasta	PCDHGA6	chr5	141368891	141517975
PCDHGA6_chr5_141368891_141517975	0/0	c0028	2799	1	0	0	1	0	0	copy fasta	PCDHGA6	chr5	141368891	141517975
PCDHGA6_chr5_141368891_141517975	0/0	c0029	2799	1	1	0	0	0	0	copy fasta	PCDHGA6	chr5	141368891	141517975
PCDHGA7_chr5_141377742_141517975	0/1	c0001	2799	124	39	29	35	8	12	copy fasta	PCDHGA7	chr5	141377742	141517975
PCDHGA7_chr5_141377742_141517975	1/0	c0002	2799	92	16	19	41	3	12	copy fasta	PCDHGA7	chr5	141377742	141517975
PCDHGA7_chr5_141377742_141517975	0/0	c0003	2799	31	3	1	26	0	1	copy fasta	PCDHGA7	chr5	141377742	141517975
PCDHGA7_chr5_141377742_141517975	0/0	c0004	2799	12	3	2	7	0	0	copy fasta	PCDHGA7	chr5	141377742	141517975
PCDHGA7_chr5_141377742_141517975	0/0	c0005	2799	8	6	0	0	1	1	copy fasta	PCDHGA7	chr5	141377742	141517975
PCDHGA7_chr5_141377742_141517975	0/0	c0006	2799	3	2	1	0	0	0	copy fasta	PCDHGA7	chr5	141377742	141517975
PCDHGA7_chr5_141377742_141517975	0/0	c0007	2799	2	2	0	0	0	0	copy fasta	PCDHGA7	chr5	141377742	141517975
PCDHGA7_chr5_141377742_141517975	0/0	c0008	2799	2	2	0	0	0	0	copy fasta	PCDHGA7	chr5	141377742	141517975
PCDHGA7_chr5_141377742_141517975	0/0	c0009	2799	2	1	1	0	0	0	copy fasta	PCDHGA7	chr5	141377742	141517975
PCDHGA7_chr5_141377742_141517975	0/0	c0010	2799	2	2	0	0	0	0	copy fasta	PCDHGA7	chr5	141377742	141517975
PCDHGA7_chr5_141377742_141517975	0/0	c0011	2799	1	1	0	0	0	0	copy fasta	PCDHGA7	chr5	141377742	141517975
PCDHGA7_chr5_141377742_141517975	0/0	c0012	2799	1	1	0	0	0	0	copy fasta	PCDHGA7	chr5	141377742	141517975
PCDHGA7_chr5_141377742_141517975	0/0	c0013	2799	1	1	0	0	0	0	copy fasta	PCDHGA7	chr5	141377742	141517975
PCDHGA7_chr5_141377742_141517975	0/0	c0014	2799	1	1	0	0	0	0	copy fasta	PCDHGA7	chr5	141377742	141517975
PCDHGA7_chr5_141377742_141517975	0/0	c0015	2799	1	1	0	0	0	0	copy fasta	PCDHGA7	chr5	141377742	141517975
PCDHGA7_chr5_141377742_141517975	0/0	c0016	2799	1	1	0	0	0	0	copy fasta	PCDHGA7	chr5	141377742	141517975
PCDHGA7_chr5_141377742_141517975	0/0	c0017	2799	1	0	0	1	0	0	copy fasta	PCDHGA7	chr5	141377742	141517975
PCDHGA7_chr5_141377742_141517975	0/0	c0018	2799	1	0	0	1	0	0	copy fasta	PCDHGA7	chr5	141377742	141517975
PCDHGA7_chr5_141377742_141517975	0/0	c0019	2799	1	0	0	1	0	0	copy fasta	PCDHGA7	chr5	141377742	141517975
PCDHGA7_chr5_141377742_141517975	0/0	c0020	2799	1	0	1	0	0	0	copy fasta	PCDHGA7	chr5	141377742	141517975
PCDHGA7_chr5_141377742_141517975	0/0	c0021	2799	1	1	0	0	0	0	copy fasta	PCDHGA7	chr5	141377742	141517975
PCDHGA7_chr5_141377742_141517975	0/0	c0022	2799	1	1	0	0	0	0	copy fasta	PCDHGA7	chr5	141377742	141517975
PCDHGA7_chr5_141377742_141517975	0/0	c0023	2799	1	0	0	0	1	0	copy fasta	PCDHGA7	chr5	141377742	141517975
PCDHGA7_chr5_141377742_141517975	0/0	c0024	2799	1	0	0	0	1	0	copy fasta	PCDHGA7	chr5	141377742	141517975
PCDHGA8_chr5_141387633_141517975	0/1	c0001	2799	141	46	32	45	6	11	copy fasta	PCDHGA8	chr5	141387633	141517975
PCDHGA8_chr5_141387633_141517975	0/0	c0002	2799	49	4	15	25	4	1	copy fasta	PCDHGA8	chr5	141387633	141517975
PCDHGA8_chr5_141387633_141517975	0/0	c0003	2798	44	9	6	26	1	2	copy fasta	PCDHGA8	chr5	141387633	141517975
PCDHGA8_chr5_141387633_141517975	0/0	c0004	2799	23	11	1	3	0	8	copy fasta	PCDHGA8	chr5	141387633	141517975
PCDHGA8_chr5_141387633_141517975	0/0	c0005	2799	9	0	2	7	0	0	copy fasta	PCDHGA8	chr5	141387633	141517975
PCDHGA8_chr5_141387633_141517975	0/0	c0006	2799	8	5	1	0	1	1	copy fasta	PCDHGA8	chr5	141387633	141517975
PCDHGA8_chr5_141387633_141517975	0/0	c0007	2799	5	0	0	5	0	0	copy fasta	PCDHGA8	chr5	141387633	141517975
PCDHGA8_chr5_141387633_141517975	0/0	c0008	2799	2	2	0	0	0	0	copy fasta	PCDHGA8	chr5	141387633	141517975
PCDHGA8_chr5_141387633_141517975	1/0	c0009	2799	2	0	0	1	0	0	copy fasta	PCDHGA8	chr5	141387633	141517975
PCDHGA8_chr5_141387633_141517975	0/0	c0010	2799	2	2	0	0	0	0	copy fasta	PCDHGA8	chr5	141387633	141517975
PCDHGA8_chr5_141387633_141517975	0/0	c0011	2799	2	2	0	0	0	0	copy fasta	PCDHGA8	chr5	141387633	141517975
PCDHGA8_chr5_141387633_141517975	0/0	c0012	2798	1	0	0	1	0	0	copy fasta	PCDHGA8	chr5	141387633	141517975
PCDHGA8_chr5_141387633_141517975	0/0	c0013	2799	1	0	0	1	0	0	copy fasta	PCDHGA8	chr5	141387633	141517975
PCDHGA8_chr5_141387633_141517975	0/0	c0014	2799	1	1	0	0	0	0	copy fasta	PCDHGA8	chr5	141387633	141517975
PCDHGA8_chr5_141387633_141517975	0/0	c0015	2799	1	0	0	0	1	0	copy fasta	PCDHGA8	chr5	141387633	141517975
PCDHGA8_chr5_141387633_141517975	0/0	c0016	2799	1	1	0	0	0	0	copy fasta	PCDHGA8	chr5	141387633	141517975
PCDHGA8_chr5_141387633_141517975	0/0	c0017	2799	1	0	1	0	0	0	copy fasta	PCDHGA8	chr5	141387633	141517975
PCDHGA8_chr5_141387633_141517975	0/0	c0018	2799	1	0	0	1	0	0	copy fasta	PCDHGA8	chr5	141387633	141517975
PCDHGA8_chr5_141387633_141517975	0/0	c0019	2799	1	1	0	0	0	0	copy fasta	PCDHGA8	chr5	141387633	141517975
PCDHGA8_chr5_141387633_141517975	0/0	c0020	2799	1	0	0	1	0	0	copy fasta	PCDHGA8	chr5	141387633	141517975
PCDHGA8_chr5_141387633_141517975	0/0	c0021	2799	1	0	0	0	0	1	copy fasta	PCDHGA8	chr5	141387633	141517975