JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PCDHGA8_chr5_141387633_141517975	0/0	c0022	2799	1	0	0	0	0	1	copy fasta	PCDHGA8	chr5	141387633	141517975
PCDHGA8_chr5_141387633_141517975	0/0	c0023	2799	1	1	0	0	0	0	copy fasta	PCDHGA8	chr5	141387633	141517975
PCDHGA8_chr5_141387633_141517975	0/0	c0024	2799	1	1	0	0	0	0	copy fasta	PCDHGA8	chr5	141387633	141517975
PCDHGA8_chr5_141387633_141517975	0/0	c0025	2799	1	0	0	0	1	0	copy fasta	PCDHGA8	chr5	141387633	141517975
PCDHGA8_chr5_141387633_141517975	0/0	c0026	2799	1	0	0	0	0	1	copy fasta	PCDHGA8	chr5	141387633	141517975
PCDHGA9_chr5_141397778_141517975	1/0	c0001	2799	93	13	21	42	3	13	copy fasta	PCDHGA9	chr5	141397778	141517975
PCDHGA9_chr5_141397778_141517975	0/0	c0002	2799	69	24	17	25	1	2	copy fasta	PCDHGA9	chr5	141397778	141517975
PCDHGA9_chr5_141397778_141517975	0/0	c0003	2799	51	20	4	16	2	9	copy fasta	PCDHGA9	chr5	141397778	141517975
PCDHGA9_chr5_141397778_141517975	0/0	c0004	2799	41	9	6	23	1	2	copy fasta	PCDHGA9	chr5	141397778	141517975
PCDHGA9_chr5_141397778_141517975	0/1	c0005	2799	22	10	5	0	4	2	copy fasta	PCDHGA9	chr5	141397778	141517975
PCDHGA9_chr5_141397778_141517975	0/0	c0006	2799	4	0	2	0	2	0	copy fasta	PCDHGA9	chr5	141397778	141517975
PCDHGA9_chr5_141397778_141517975	0/0	c0007	2799	3	3	0	0	0	0	copy fasta	PCDHGA9	chr5	141397778	141517975
PCDHGA9_chr5_141397778_141517975	0/0	c0008	2799	2	2	0	0	0	0	copy fasta	PCDHGA9	chr5	141397778	141517975
PCDHGA9_chr5_141397778_141517975	0/0	c0009	2799	2	2	0	0	0	0	copy fasta	PCDHGA9	chr5	141397778	141517975
PCDHGA9_chr5_141397778_141517975	0/0	c0010	2799	2	0	0	2	0	0	copy fasta	PCDHGA9	chr5	141397778	141517975
PCDHGA9_chr5_141397778_141517975	0/0	c0011	2799	1	0	0	1	0	0	copy fasta	PCDHGA9	chr5	141397778	141517975
PCDHGA9_chr5_141397778_141517975	0/0	c0012	2799	1	0	0	1	0	0	copy fasta	PCDHGA9	chr5	141397778	141517975
PCDHGA9_chr5_141397778_141517975	0/0	c0013	2799	1	1	0	0	0	0	copy fasta	PCDHGA9	chr5	141397778	141517975
PCDHGA9_chr5_141397778_141517975	0/0	c0014	2799	1	1	0	0	0	0	copy fasta	PCDHGA9	chr5	141397778	141517975
PCDHGA9_chr5_141397778_141517975	0/0	c0015	2799	1	0	0	1	0	0	copy fasta	PCDHGA9	chr5	141397778	141517975
PCDHGA9_chr5_141397778_141517975	0/0	c0016	2799	1	0	0	1	0	0	copy fasta	PCDHGA9	chr5	141397778	141517975
PCDHGA9_chr5_141397778_141517975	0/0	c0017	2799	1	1	0	0	0	0	copy fasta	PCDHGA9	chr5	141397778	141517975
PCDHGA9_chr5_141397778_141517975	0/0	c0018	2799	1	1	0	0	0	0	copy fasta	PCDHGA9	chr5	141397778	141517975
PCDHGA9_chr5_141397778_141517975	0/0	c0019	2799	1	0	1	0	0	0	copy fasta	PCDHGA9	chr5	141397778	141517975
PCDHGA9_chr5_141397778_141517975	0/0	c0020	2799	1	0	0	0	1	0	copy fasta	PCDHGA9	chr5	141397778	141517975
PCDHGA9_chr5_141397778_141517975	0/0	c0021	2799	1	1	0	0	0	0	copy fasta	PCDHGA9	chr5	141397778	141517975
PCDHGA9_chr5_141397778_141517975	0/0	c0022	2799	1	0	0	1	0	0	copy fasta	PCDHGA9	chr5	141397778	141517975
PCDHGA9_chr5_141397778_141517975	0/0	c0023	2799	1	0	0	1	0	0	copy fasta	PCDHGA9	chr5	141397778	141517975
PCDHGB1_chr5_141345099_141517975	1/0	c0001	2784	174	37	42	72	7	15	copy fasta	PCDHGB1	chr5	141345099	141517975
PCDHGB1_chr5_141345099_141517975	0/0	c0002	2784	23	12	2	7	1	1	copy fasta	PCDHGB1	chr5	141345099	141517975
PCDHGB1_chr5_141345099_141517975	0/0	c0003	2784	21	6	1	8	1	5	copy fasta	PCDHGB1	chr5	141345099	141517975
PCDHGB1_chr5_141345099_141517975	0/1	c0004	2784	20	8	5	0	4	2	copy fasta	PCDHGB1	chr5	141345099	141517975
PCDHGB1_chr5_141345099_141517975	0/0	c0005	2784	12	10	2	0	0	0	copy fasta	PCDHGB1	chr5	141345099	141517975
PCDHGB1_chr5_141345099_141517975	0/0	c0006	2784	4	0	0	4	0	0	copy fasta	PCDHGB1	chr5	141345099	141517975
PCDHGB1_chr5_141345099_141517975	0/0	c0007	2784	4	4	0	0	0	0	copy fasta	PCDHGB1	chr5	141345099	141517975
PCDHGB1_chr5_141345099_141517975	0/0	c0008	2784	3	0	0	3	0	0	copy fasta	PCDHGB1	chr5	141345099	141517975
PCDHGB1_chr5_141345099_141517975	0/0	c0009	2784	2	0	0	0	0	2	copy fasta	PCDHGB1	chr5	141345099	141517975
PCDHGB1_chr5_141345099_141517975	0/0	c0010	2784	2	2	0	0	0	0	copy fasta	PCDHGB1	chr5	141345099	141517975
PCDHGB1_chr5_141345099_141517975	0/0	c0011	2784	2	2	0	0	0	0	copy fasta	PCDHGB1	chr5	141345099	141517975
PCDHGB1_chr5_141345099_141517975	0/0	c0012	2784	1	0	0	0	0	1	copy fasta	PCDHGB1	chr5	141345099	141517975
PCDHGB1_chr5_141345099_141517975	0/0	c0013	2784	1	0	0	0	1	0	copy fasta	PCDHGB1	chr5	141345099	141517975
PCDHGB1_chr5_141345099_141517975	0/0	c0014	2784	1	0	0	1	0	0	copy fasta	PCDHGB1	chr5	141345099	141517975
PCDHGB1_chr5_141345099_141517975	0/0	c0015	2784	1	1	0	0	0	0	copy fasta	PCDHGB1	chr5	141345099	141517975
PCDHGB1_chr5_141345099_141517975	0/0	c0016	2784	1	0	0	1	0	0	copy fasta	PCDHGB1	chr5	141345099	141517975
PCDHGB1_chr5_141345099_141517975	0/0	c0017	2784	1	0	0	1	0	0	copy fasta	PCDHGB1	chr5	141345099	141517975
PCDHGB1_chr5_141345099_141517975	0/0	c0018	2784	1	0	1	0	0	0	copy fasta	PCDHGB1	chr5	141345099	141517975
PCDHGB1_chr5_141345099_141517975	0/0	c0019	2784	1	1	0	0	0	0	copy fasta	PCDHGB1	chr5	141345099	141517975
PCDHGB1_chr5_141345099_141517975	0/0	c0020	2784	1	0	0	1	0	0	copy fasta	PCDHGB1	chr5	141345099	141517975
PCDHGB1_chr5_141345099_141517975	0/0	c0021	2784	1	1	0	0	0	0	copy fasta	PCDHGB1	chr5	141345099	141517975
PCDHGB1_chr5_141345099_141517975	0/0	c0022	2784	1	0	1	0	0	0	copy fasta	PCDHGB1	chr5	141345099	141517975