JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PCDHGB2_chr5_141354994_141517975	1/0	c0001	2796	169	39	32	69	7	21	copy fasta	PCDHGB2	chr5	141354994	141517975
PCDHGB2_chr5_141354994_141517975	0/0	c0002	2796	45	11	9	22	1	2	copy fasta	PCDHGB2	chr5	141354994	141517975
PCDHGB2_chr5_141354994_141517975	0/1	c0003	2796	30	17	6	0	4	2	copy fasta	PCDHGB2	chr5	141354994	141517975
PCDHGB2_chr5_141354994_141517975	0/0	c0004	2796	8	0	2	6	0	0	copy fasta	PCDHGB2	chr5	141354994	141517975
PCDHGB2_chr5_141354994_141517975	0/0	c0005	2796	8	6	0	0	1	1	copy fasta	PCDHGB2	chr5	141354994	141517975
PCDHGB2_chr5_141354994_141517975	0/0	c0006	2796	4	0	3	0	1	0	copy fasta	PCDHGB2	chr5	141354994	141517975
PCDHGB2_chr5_141354994_141517975	0/0	c0007	2796	3	2	1	0	0	0	copy fasta	PCDHGB2	chr5	141354994	141517975
PCDHGB2_chr5_141354994_141517975	0/0	c0008	2796	2	1	1	0	0	0	copy fasta	PCDHGB2	chr5	141354994	141517975
PCDHGB2_chr5_141354994_141517975	0/0	c0009	2796	2	2	0	0	0	0	copy fasta	PCDHGB2	chr5	141354994	141517975
PCDHGB2_chr5_141354994_141517975	0/0	c0010	2796	2	2	0	0	0	0	copy fasta	PCDHGB2	chr5	141354994	141517975
PCDHGB2_chr5_141354994_141517975	0/0	c0011	2796	2	2	0	0	0	0	copy fasta	PCDHGB2	chr5	141354994	141517975
PCDHGB2_chr5_141354994_141517975	0/0	c0012	2796	2	0	0	2	0	0	copy fasta	PCDHGB2	chr5	141354994	141517975
PCDHGB2_chr5_141354994_141517975	0/0	c0013	2796	1	0	0	1	0	0	copy fasta	PCDHGB2	chr5	141354994	141517975
PCDHGB2_chr5_141354994_141517975	0/0	c0014	2796	1	0	0	1	0	0	copy fasta	PCDHGB2	chr5	141354994	141517975
PCDHGB2_chr5_141354994_141517975	0/0	c0015	2796	1	1	0	0	0	0	copy fasta	PCDHGB2	chr5	141354994	141517975
PCDHGB2_chr5_141354994_141517975	0/0	c0016	2796	1	1	0	0	0	0	copy fasta	PCDHGB2	chr5	141354994	141517975
PCDHGB2_chr5_141354994_141517975	0/0	c0017	2796	1	1	0	0	0	0	copy fasta	PCDHGB2	chr5	141354994	141517975
PCDHGB2_chr5_141354994_141517975	0/0	c0018	2796	1	1	0	0	0	0	copy fasta	PCDHGB2	chr5	141354994	141517975
PCDHGB2_chr5_141354994_141517975	0/0	c0019	2796	1	0	0	1	0	0	copy fasta	PCDHGB2	chr5	141354994	141517975
PCDHGB2_chr5_141354994_141517975	0/0	c0020	2796	1	0	1	0	0	0	copy fasta	PCDHGB2	chr5	141354994	141517975
PCDHGB2_chr5_141354994_141517975	0/0	c0021	2796	1	0	0	1	0	0	copy fasta	PCDHGB2	chr5	141354994	141517975
PCDHGB2_chr5_141354994_141517975	0/0	c0022	2796	1	0	0	1	0	0	copy fasta	PCDHGB2	chr5	141354994	141517975
PCDHGB2_chr5_141354994_141517975	0/0	c0023	2796	1	0	1	0	0	0	copy fasta	PCDHGB2	chr5	141354994	141517975
PCDHGB3_chr5_141365242_141517975	0/0	c0001	2790	153	52	26	57	7	11	copy fasta	PCDHGB3	chr5	141365242	141517975
PCDHGB3_chr5_141365242_141517975	1/0	c0002	2790	82	9	15	44	3	10	copy fasta	PCDHGB3	chr5	141365242	141517975
PCDHGB3_chr5_141365242_141517975	0/1	c0003	2790	20	8	6	0	4	1	copy fasta	PCDHGB3	chr5	141365242	141517975
PCDHGB3_chr5_141365242_141517975	0/0	c0004	2790	9	0	2	7	0	0	copy fasta	PCDHGB3	chr5	141365242	141517975
PCDHGB3_chr5_141365242_141517975	0/0	c0005	2790	4	3	1	0	0	0	copy fasta	PCDHGB3	chr5	141365242	141517975
PCDHGB3_chr5_141365242_141517975	0/0	c0006	2790	4	0	4	0	0	0	copy fasta	PCDHGB3	chr5	141365242	141517975
PCDHGB3_chr5_141365242_141517975	0/0	c0007	2790	3	3	0	0	0	0	copy fasta	PCDHGB3	chr5	141365242	141517975
PCDHGB3_chr5_141365242_141517975	0/0	c0008	2790	2	2	0	0	0	0	copy fasta	PCDHGB3	chr5	141365242	141517975
PCDHGB3_chr5_141365242_141517975	0/0	c0009	2790	2	0	0	1	0	1	copy fasta	PCDHGB3	chr5	141365242	141517975
PCDHGB3_chr5_141365242_141517975	0/0	c0010	2790	2	0	0	2	0	0	copy fasta	PCDHGB3	chr5	141365242	141517975
PCDHGB3_chr5_141365242_141517975	0/0	c0011	2790	2	2	0	0	0	0	copy fasta	PCDHGB3	chr5	141365242	141517975
PCDHGB3_chr5_141365242_141517975	0/0	c0012	2790	1	0	1	0	0	0	copy fasta	PCDHGB3	chr5	141365242	141517975
PCDHGB3_chr5_141365242_141517975	0/0	c0013	2790	1	1	0	0	0	0	copy fasta	PCDHGB3	chr5	141365242	141517975
PCDHGB3_chr5_141365242_141517975	0/0	c0014	2790	1	0	0	0	0	1	copy fasta	PCDHGB3	chr5	141365242	141517975
PCDHGB3_chr5_141365242_141517975	0/0	c0015	2790	1	0	0	0	0	1	copy fasta	PCDHGB3	chr5	141365242	141517975
PCDHGB3_chr5_141365242_141517975	0/0	c0016	2790	1	0	0	1	0	0	copy fasta	PCDHGB3	chr5	141365242	141517975
PCDHGB3_chr5_141365242_141517975	0/0	c0017	2790	1	1	0	0	0	0	copy fasta	PCDHGB3	chr5	141365242	141517975
PCDHGB3_chr5_141365242_141517975	0/0	c0018	2790	1	1	0	0	0	0	copy fasta	PCDHGB3	chr5	141365242	141517975
PCDHGB3_chr5_141365242_141517975	0/0	c0019	2790	1	0	0	0	0	1	copy fasta	PCDHGB3	chr5	141365242	141517975
PCDHGB3_chr5_141365242_141517975	0/0	c0020	2790	1	1	0	0	0	0	copy fasta	PCDHGB3	chr5	141365242	141517975
PCDHGB3_chr5_141365242_141517975	0/0	c0021	2790	1	1	0	0	0	0	copy fasta	PCDHGB3	chr5	141365242	141517975
PCDHGB3_chr5_141365242_141517975	0/0	c0022	2790	1	0	1	0	0	0	copy fasta	PCDHGB3	chr5	141365242	141517975
PCDHGB3_chr5_141365242_141517975	0/0	c0023	2790	1	1	0	0	0	0	copy fasta	PCDHGB3	chr5	141365242	141517975
PCDHGB3_chr5_141365242_141517975	0/0	c0024	2790	1	1	0	0	0	0	copy fasta	PCDHGB3	chr5	141365242	141517975
PCDHGB4_chr5_141382698_141517975	1/1	c0001	2772	218	57	39	95	10	15	copy fasta	PCDHGB4	chr5	141382698	141517975
PCDHGB4_chr5_141382698_141517975	0/0	c0002	2772	24	6	1	10	1	6	copy fasta	PCDHGB4	chr5	141382698	141517975
PCDHGB4_chr5_141382698_141517975	0/0	c0003	2772	15	13	1	0	0	1	copy fasta	PCDHGB4	chr5	141382698	141517975