JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PCDHGB4_chr5_141382698_141517975	0/0	c0004	2772	7	0	0	7	0	0	copy fasta	PCDHGB4	chr5	141382698	141517975
PCDHGB4_chr5_141382698_141517975	0/0	c0005	2766	6	2	2	0	0	2	copy fasta	PCDHGB4	chr5	141382698	141517975
PCDHGB4_chr5_141382698_141517975	0/0	c0006	2772	4	1	2	0	1	0	copy fasta	PCDHGB4	chr5	141382698	141517975
PCDHGB4_chr5_141382698_141517975	0/0	c0007	2772	2	0	2	0	0	0	copy fasta	PCDHGB4	chr5	141382698	141517975
PCDHGB4_chr5_141382698_141517975	0/0	c0008	2772	2	2	0	0	0	0	copy fasta	PCDHGB4	chr5	141382698	141517975
PCDHGB4_chr5_141382698_141517975	0/0	c0009	2772	2	0	0	0	0	2	copy fasta	PCDHGB4	chr5	141382698	141517975
PCDHGB4_chr5_141382698_141517975	0/0	c0010	2772	2	0	2	0	0	0	copy fasta	PCDHGB4	chr5	141382698	141517975
PCDHGB4_chr5_141382698_141517975	0/0	c0011	2772	2	2	0	0	0	0	copy fasta	PCDHGB4	chr5	141382698	141517975
PCDHGB4_chr5_141382698_141517975	0/0	c0012	2772	1	0	1	0	0	0	copy fasta	PCDHGB4	chr5	141382698	141517975
PCDHGB4_chr5_141382698_141517975	0/0	c0013	2772	1	0	0	0	1	0	copy fasta	PCDHGB4	chr5	141382698	141517975
PCDHGB4_chr5_141382698_141517975	0/0	c0014	2772	1	0	1	0	0	0	copy fasta	PCDHGB4	chr5	141382698	141517975
PCDHGB4_chr5_141382698_141517975	0/0	c0015	2772	1	0	0	1	0	0	copy fasta	PCDHGB4	chr5	141382698	141517975
PCDHGB4_chr5_141382698_141517975	0/0	c0016	2772	1	1	0	0	0	0	copy fasta	PCDHGB4	chr5	141382698	141517975
PCDHGB4_chr5_141382698_141517975	0/0	c0017	2772	1	1	0	0	0	0	copy fasta	PCDHGB4	chr5	141382698	141517975
PCDHGB4_chr5_141382698_141517975	0/0	c0018	2772	1	1	0	0	0	0	copy fasta	PCDHGB4	chr5	141382698	141517975
PCDHGB4_chr5_141382698_141517975	0/0	c0019	2772	1	0	1	0	0	0	copy fasta	PCDHGB4	chr5	141382698	141517975
PCDHGB4_chr5_141382698_141517975	0/0	c0020	2772	1	0	0	1	0	0	copy fasta	PCDHGB4	chr5	141382698	141517975
PCDHGB4_chr5_141382698_141517975	0/0	c0021	2772	1	0	0	0	1	0	copy fasta	PCDHGB4	chr5	141382698	141517975
PCDHGB5_chr5_141392947_141517975	1/1	c0001	2772	193	47	46	75	11	12	copy fasta	PCDHGB5	chr5	141392947	141517975
PCDHGB5_chr5_141392947_141517975	0/0	c0002	2772	49	13	6	27	1	2	copy fasta	PCDHGB5	chr5	141392947	141517975
PCDHGB5_chr5_141392947_141517975	0/0	c0003	2772	22	3	1	9	1	8	copy fasta	PCDHGB5	chr5	141392947	141517975
PCDHGB5_chr5_141392947_141517975	0/0	c0004	2772	7	6	1	0	0	0	copy fasta	PCDHGB5	chr5	141392947	141517975
PCDHGB5_chr5_141392947_141517975	0/0	c0005	2772	5	4	1	0	0	0	copy fasta	PCDHGB5	chr5	141392947	141517975
PCDHGB5_chr5_141392947_141517975	0/0	c0006	2772	3	3	0	0	0	0	copy fasta	PCDHGB5	chr5	141392947	141517975
PCDHGB5_chr5_141392947_141517975	0/0	c0007	2772	3	2	1	0	0	0	copy fasta	PCDHGB5	chr5	141392947	141517975
PCDHGB5_chr5_141392947_141517975	0/0	c0008	2772	3	3	0	0	0	0	copy fasta	PCDHGB5	chr5	141392947	141517975
PCDHGB5_chr5_141392947_141517975	0/0	c0009	2772	2	2	0	0	0	0	copy fasta	PCDHGB5	chr5	141392947	141517975
PCDHGB5_chr5_141392947_141517975	0/0	c0010	2772	2	0	0	2	0	0	copy fasta	PCDHGB5	chr5	141392947	141517975
PCDHGB5_chr5_141392947_141517975	0/0	c0011	2772	1	0	0	0	0	1	copy fasta	PCDHGB5	chr5	141392947	141517975
PCDHGB5_chr5_141392947_141517975	0/0	c0012	2772	1	1	0	0	0	0	copy fasta	PCDHGB5	chr5	141392947	141517975
PCDHGB5_chr5_141392947_141517975	0/0	c0013	2772	1	0	0	1	0	0	copy fasta	PCDHGB5	chr5	141392947	141517975
PCDHGB5_chr5_141392947_141517975	0/0	c0014	2772	1	0	0	1	0	0	copy fasta	PCDHGB5	chr5	141392947	141517975
PCDHGB5_chr5_141392947_141517975	0/0	c0015	2772	1	0	0	1	0	0	copy fasta	PCDHGB5	chr5	141392947	141517975
PCDHGB5_chr5_141392947_141517975	0/0	c0016	2772	1	1	0	0	0	0	copy fasta	PCDHGB5	chr5	141392947	141517975
PCDHGB5_chr5_141392947_141517975	0/0	c0017	2772	1	0	0	0	0	1	copy fasta	PCDHGB5	chr5	141392947	141517975
PCDHGB5_chr5_141392947_141517975	0/0	c0018	2772	1	0	0	0	0	1	copy fasta	PCDHGB5	chr5	141392947	141517975
PCDHGB5_chr5_141392947_141517975	0/0	c0019	2772	1	0	0	0	1	0	copy fasta	PCDHGB5	chr5	141392947	141517975
PCDHGB5_chr5_141392947_141517975	0/0	c0020	2772	1	0	0	0	0	1	copy fasta	PCDHGB5	chr5	141392947	141517975
PCDHGB5_chr5_141392947_141517975	0/0	c0021	2772	1	1	0	0	0	0	copy fasta	PCDHGB5	chr5	141392947	141517975
PCDHGB6_chr5_141403021_141517975	1/0	c0001	2793	152	28	36	70	5	12	copy fasta	PCDHGB6	chr5	141403021	141517975
PCDHGB6_chr5_141403021_141517975	0/0	c0002	2793	45	10	6	26	1	2	copy fasta	PCDHGB6	chr5	141403021	141517975
PCDHGB6_chr5_141403021_141517975	0/1	c0003	2793	33	17	7	0	5	3	copy fasta	PCDHGB6	chr5	141403021	141517975
PCDHGB6_chr5_141403021_141517975	0/0	c0004	2793	24	6	1	9	1	7	copy fasta	PCDHGB6	chr5	141403021	141517975
PCDHGB6_chr5_141403021_141517975	0/0	c0005	2793	10	0	2	8	0	0	copy fasta	PCDHGB6	chr5	141403021	141517975
PCDHGB6_chr5_141403021_141517975	0/0	c0006	2793	9	7	2	0	0	0	copy fasta	PCDHGB6	chr5	141403021	141517975
PCDHGB6_chr5_141403021_141517975	0/0	c0007	2793	3	3	0	0	0	0	copy fasta	PCDHGB6	chr5	141403021	141517975
PCDHGB6_chr5_141403021_141517975	0/0	c0008	2793	3	3	0	0	0	0	copy fasta	PCDHGB6	chr5	141403021	141517975
PCDHGB6_chr5_141403021_141517975	0/0	c0009	2793	3	3	0	0	0	0	copy fasta	PCDHGB6	chr5	141403021	141517975
PCDHGB6_chr5_141403021_141517975	0/0	c0010	2793	2	2	0	0	0	0	copy fasta	PCDHGB6	chr5	141403021	141517975
PCDHGB6_chr5_141403021_141517975	0/0	c0011	2793	2	0	0	2	0	0	copy fasta	PCDHGB6	chr5	141403021	141517975