JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PCDHGB6_chr5_141403021_141517975	0/0	c0012	2793	2	2	0	0	0	0	copy fasta	PCDHGB6	chr5	141403021	141517975
PCDHGB6_chr5_141403021_141517975	0/0	c0013	2793	2	0	0	0	0	2	copy fasta	PCDHGB6	chr5	141403021	141517975
PCDHGB6_chr5_141403021_141517975	0/0	c0014	2793	2	2	0	0	0	0	copy fasta	PCDHGB6	chr5	141403021	141517975
PCDHGB6_chr5_141403021_141517975	0/0	c0015	2793	1	0	1	0	0	0	copy fasta	PCDHGB6	chr5	141403021	141517975
PCDHGB6_chr5_141403021_141517975	0/0	c0016	2793	1	1	0	0	0	0	copy fasta	PCDHGB6	chr5	141403021	141517975
PCDHGB6_chr5_141403021_141517975	0/0	c0017	2793	1	0	0	1	0	0	copy fasta	PCDHGB6	chr5	141403021	141517975
PCDHGB6_chr5_141403021_141517975	0/0	c0018	2793	1	1	0	0	0	0	copy fasta	PCDHGB6	chr5	141403021	141517975
PCDHGB6_chr5_141403021_141517975	0/0	c0019	2793	1	1	0	0	0	0	copy fasta	PCDHGB6	chr5	141403021	141517975
PCDHGB6_chr5_141403021_141517975	0/0	c0020	2793	1	1	0	0	0	0	copy fasta	PCDHGB6	chr5	141403021	141517975
PCDHGB6_chr5_141403021_141517975	0/0	c0021	2793	1	0	0	1	0	0	copy fasta	PCDHGB6	chr5	141403021	141517975
PCDHGB6_chr5_141403021_141517975	0/0	c0022	2793	1	0	1	0	0	0	copy fasta	PCDHGB6	chr5	141403021	141517975
PCDHGB6_chr5_141403021_141517975	0/0	c0023	568	1	0	0	1	0	0	copy fasta	PCDHGB6	chr5	141403021	141517975
PCDHGB6_chr5_141403021_141517975	0/0	c0024	2793	1	1	0	0	0	0	copy fasta	PCDHGB6	chr5	141403021	141517975
PCDHGB7_chr5_141412677_141517975	0/1	c0001	2790	147	50	24	55	7	10	copy fasta	PCDHGB7	chr5	141412677	141517975
PCDHGB7_chr5_141412677_141517975	1/0	c0002	2790	95	15	21	44	3	11	copy fasta	PCDHGB7	chr5	141412677	141517975
PCDHGB7_chr5_141412677_141517975	0/0	c0003	2790	22	3	10	7	1	1	copy fasta	PCDHGB7	chr5	141412677	141517975
PCDHGB7_chr5_141412677_141517975	0/0	c0004	2790	19	6	3	8	1	1	copy fasta	PCDHGB7	chr5	141412677	141517975
PCDHGB7_chr5_141412677_141517975	0/0	c0005	2790	4	3	1	0	0	0	copy fasta	PCDHGB7	chr5	141412677	141517975
PCDHGB7_chr5_141412677_141517975	0/0	c0006	2790	3	3	0	0	0	0	copy fasta	PCDHGB7	chr5	141412677	141517975
PCDHGB7_chr5_141412677_141517975	0/0	c0007	2790	2	0	0	0	0	2	copy fasta	PCDHGB7	chr5	141412677	141517975
PCDHGB7_chr5_141412677_141517975	0/0	c0008	2790	2	2	0	0	0	0	copy fasta	PCDHGB7	chr5	141412677	141517975
PCDHGB7_chr5_141412677_141517975	0/0	c0009	2790	1	0	0	1	0	0	copy fasta	PCDHGB7	chr5	141412677	141517975
PCDHGB7_chr5_141412677_141517975	0/0	c0010	2790	1	0	0	1	0	0	copy fasta	PCDHGB7	chr5	141412677	141517975
PCDHGB7_chr5_141412677_141517975	0/0	c0011	2790	1	0	0	1	0	0	copy fasta	PCDHGB7	chr5	141412677	141517975
PCDHGB7_chr5_141412677_141517975	0/0	c0012	2790	1	1	0	0	0	0	copy fasta	PCDHGB7	chr5	141412677	141517975
PCDHGB7_chr5_141412677_141517975	0/0	c0013	2790	1	0	0	0	0	1	copy fasta	PCDHGB7	chr5	141412677	141517975
PCDHGB7_chr5_141412677_141517975	0/0	c0014	2790	1	1	0	0	0	0	copy fasta	PCDHGB7	chr5	141412677	141517975
PCDHGB7_chr5_141412677_141517975	0/0	c0015	2790	1	0	0	1	0	0	copy fasta	PCDHGB7	chr5	141412677	141517975
PCDHGB7_chr5_141412677_141517975	0/0	c0016	2790	1	1	0	0	0	0	copy fasta	PCDHGB7	chr5	141412677	141517975
PCDHGB7_chr5_141412677_141517975	0/0	c0017	2790	1	0	1	0	0	0	copy fasta	PCDHGB7	chr5	141412677	141517975
PCDHGB7_chr5_141412677_141517975	0/0	c0018	2790	1	1	0	0	0	0	copy fasta	PCDHGB7	chr5	141412677	141517975
PCDHGB7_chr5_141412677_141517975	0/0	c0019	2790	1	1	0	0	0	0	copy fasta	PCDHGB7	chr5	141412677	141517975
PCDHGB7_chr5_141412677_141517975	0/0	c0020	2790	1	1	0	0	0	0	copy fasta	PCDHGB7	chr5	141412677	141517975
PCDHGC3_chr5_141470966_141517975	0/1	c0001	2805	136	56	20	39	7	13	copy fasta	PCDHGC3	chr5	141470966	141517975
PCDHGC3_chr5_141470966_141517975	1/0	c0002	2805	117	10	29	50	7	20	copy fasta	PCDHGC3	chr5	141470966	141517975
PCDHGC3_chr5_141470966_141517975	0/0	c0003	2805	72	11	20	35	4	2	copy fasta	PCDHGC3	chr5	141470966	141517975
PCDHGC3_chr5_141470966_141517975	0/0	c0004	2805	4	4	0	0	0	0	copy fasta	PCDHGC3	chr5	141470966	141517975
PCDHGC3_chr5_141470966_141517975	0/0	c0005	2805	3	0	0	3	0	0	copy fasta	PCDHGC3	chr5	141470966	141517975
PCDHGC3_chr5_141470966_141517975	0/0	c0006	2805	3	3	0	0	0	0	copy fasta	PCDHGC3	chr5	141470966	141517975
PCDHGC3_chr5_141470966_141517975	0/0	c0007	2805	2	2	0	0	0	0	copy fasta	PCDHGC3	chr5	141470966	141517975
PCDHGC3_chr5_141470966_141517975	0/0	c0008	2805	2	2	0	0	0	0	copy fasta	PCDHGC3	chr5	141470966	141517975
PCDHGC3_chr5_141470966_141517975	0/0	c0009	2805	2	2	0	0	0	0	copy fasta	PCDHGC3	chr5	141470966	141517975
PCDHGC3_chr5_141470966_141517975	0/0	c0010	2805	1	1	0	0	0	0	copy fasta	PCDHGC3	chr5	141470966	141517975
PCDHGC3_chr5_141470966_141517975	0/0	c0011	2805	1	0	0	1	0	0	copy fasta	PCDHGC3	chr5	141470966	141517975
PCDHGC3_chr5_141470966_141517975	0/0	c0012	2805	1	0	0	1	0	0	copy fasta	PCDHGC3	chr5	141470966	141517975
PCDHGC3_chr5_141470966_141517975	0/0	c0013	2805	1	0	0	1	0	0	copy fasta	PCDHGC3	chr5	141470966	141517975
PCDHGC3_chr5_141470966_141517975	0/0	c0014	2805	1	1	0	0	0	0	copy fasta	PCDHGC3	chr5	141470966	141517975
PCDHGC3_chr5_141470966_141517975	0/0	c0015	2805	1	0	0	0	0	1	copy fasta	PCDHGC3	chr5	141470966	141517975
PCDHGC3_chr5_141470966_141517975	0/0	c0016	2805	1	0	0	1	0	0	copy fasta	PCDHGC3	chr5	141470966	141517975
PCDHGC3_chr5_141470966_141517975	0/0	c0017	2805	1	0	0	1	0	0	copy fasta	PCDHGC3	chr5	141470966	141517975