JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PCDHGC3_chr5_141470966_141517975	0/0	c0018	2805	1	0	1	0	0	0	copy fasta	PCDHGC3	chr5	141470966	141517975
PCDHGC4_chr5_141480030_141517975	1/1	c0001	2817	317	71	68	128	16	32	copy fasta	PCDHGC4	chr5	141480030	141517975
PCDHGC4_chr5_141480030_141517975	0/0	c0002	2817	19	16	1	0	1	1	copy fasta	PCDHGC4	chr5	141480030	141517975
PCDHGC4_chr5_141480030_141517975	0/0	c0003	2817	4	4	0	0	0	0	copy fasta	PCDHGC4	chr5	141480030	141517975
PCDHGC4_chr5_141480030_141517975	0/0	c0004	2817	2	0	0	0	0	2	copy fasta	PCDHGC4	chr5	141480030	141517975
PCDHGC4_chr5_141480030_141517975	0/0	c0005	2817	2	0	0	2	0	0	copy fasta	PCDHGC4	chr5	141480030	141517975
PCDHGC4_chr5_141480030_141517975	0/0	c0006	2817	2	0	2	0	0	0	copy fasta	PCDHGC4	chr5	141480030	141517975
PCDHGC4_chr5_141480030_141517975	0/0	c0007	2817	1	0	1	0	0	0	copy fasta	PCDHGC4	chr5	141480030	141517975
PCDHGC4_chr5_141480030_141517975	0/0	c0008	2817	1	0	0	1	0	0	copy fasta	PCDHGC4	chr5	141480030	141517975
PCDHGC4_chr5_141480030_141517975	0/0	c0009	2817	1	0	0	0	0	1	copy fasta	PCDHGC4	chr5	141480030	141517975
PCDHGC4_chr5_141480030_141517975	0/0	c0010	2817	1	0	0	1	0	0	copy fasta	PCDHGC4	chr5	141480030	141517975
PCDHGC4_chr5_141480030_141517975	0/0	c0011	2817	1	1	0	0	0	0	copy fasta	PCDHGC4	chr5	141480030	141517975
PCDHGC4_chr5_141480030_141517975	0/0	c0012	2817	1	1	0	0	0	0	copy fasta	PCDHGC4	chr5	141480030	141517975
PCDHGC4_chr5_141480030_141517975	0/0	c0013	2817	1	0	0	0	1	0	copy fasta	PCDHGC4	chr5	141480030	141517975
PCDHGC4_chr5_141480030_141517975	0/0	c0014	2817	1	1	0	0	0	0	copy fasta	PCDHGC4	chr5	141480030	141517975
PCDHGC5_chr5_141484081_141517975	1/0	c0001	2835	206	45	39	91	9	21	copy fasta	PCDHGC5	chr5	141484081	141517975
PCDHGC5_chr5_141484081_141517975	0/0	c0002	2835	69	6	21	36	3	3	copy fasta	PCDHGC5	chr5	141484081	141517975
PCDHGC5_chr5_141484081_141517975	0/0	c0003	2835	29	4	3	13	1	8	copy fasta	PCDHGC5	chr5	141484081	141517975
PCDHGC5_chr5_141484081_141517975	0/0	c0004	2835	20	17	1	0	1	1	copy fasta	PCDHGC5	chr5	141484081	141517975
PCDHGC5_chr5_141484081_141517975	0/1	c0005	2835	13	1	5	0	4	2	copy fasta	PCDHGC5	chr5	141484081	141517975
PCDHGC5_chr5_141484081_141517975	0/0	c0006	2835	7	6	1	0	0	0	copy fasta	PCDHGC5	chr5	141484081	141517975
PCDHGC5_chr5_141484081_141517975	0/0	c0007	2835	5	4	1	0	0	0	copy fasta	PCDHGC5	chr5	141484081	141517975
PCDHGC5_chr5_141484081_141517975	0/0	c0008	2835	4	4	0	0	0	0	copy fasta	PCDHGC5	chr5	141484081	141517975
PCDHGC5_chr5_141484081_141517975	0/0	c0009	2835	2	2	0	0	0	0	copy fasta	PCDHGC5	chr5	141484081	141517975
PCDHGC5_chr5_141484081_141517975	0/0	c0010	2835	2	2	0	0	0	0	copy fasta	PCDHGC5	chr5	141484081	141517975
PCDHGC5_chr5_141484081_141517975	0/0	c0011	2835	1	1	0	0	0	0	copy fasta	PCDHGC5	chr5	141484081	141517975
PCDHGC5_chr5_141484081_141517975	0/0	c0012	2835	1	1	0	0	0	0	copy fasta	PCDHGC5	chr5	141484081	141517975
PCDHGC5_chr5_141484081_141517975	0/0	c0013	2835	1	0	0	0	0	1	copy fasta	PCDHGC5	chr5	141484081	141517975
PCDHGC5_chr5_141484081_141517975	0/0	c0014	2835	1	0	0	1	0	0	copy fasta	PCDHGC5	chr5	141484081	141517975
PCDHGC5_chr5_141484081_141517975	0/0	c0015	2835	1	1	0	0	0	0	copy fasta	PCDHGC5	chr5	141484081	141517975
PCDHGC5_chr5_141484081_141517975	0/0	c0016	2835	1	0	0	1	0	0	copy fasta	PCDHGC5	chr5	141484081	141517975
PCDHGC5_chr5_141484081_141517975	0/0	c0017	2835	1	0	1	0	0	0	copy fasta	PCDHGC5	chr5	141484081	141517975
PCED1A_chr20_2830314_2845655	1/1	c0001	1365	319	79	63	135	12	28	copy fasta	PCED1A	chr20	2830314	2845655
PCED1A_chr20_2830314_2845655	0/0	c0002	1365	90	0	12	61	4	13	copy fasta	PCED1A	chr20	2830314	2845655
PCED1A_chr20_2830314_2845655	0/0	c0003	1365	12	1	1	9	0	1	copy fasta	PCED1A	chr20	2830314	2845655
PCED1A_chr20_2830314_2845655	0/0	c0004	1365	5	5	0	0	0	0	copy fasta	PCED1A	chr20	2830314	2845655
PCED1A_chr20_2830314_2845655	0/0	c0005	1365	4	0	0	4	0	0	copy fasta	PCED1A	chr20	2830314	2845655
PCED1A_chr20_2830314_2845655	0/0	c0006	1365	2	2	0	0	0	0	copy fasta	PCED1A	chr20	2830314	2845655
PCED1A_chr20_2830314_2845655	0/0	c0007	1365	1	1	0	0	0	0	copy fasta	PCED1A	chr20	2830314	2845655
PCED1A_chr20_2830314_2845655	0/0	c0008	1365	1	0	0	1	0	0	copy fasta	PCED1A	chr20	2830314	2845655
PCED1A_chr20_2830314_2845655	0/0	c0009	1365	1	1	0	0	0	0	copy fasta	PCED1A	chr20	2830314	2845655
PCED1A_chr20_2830314_2845655	0/0	c0010	1365	1	1	0	0	0	0	copy fasta	PCED1A	chr20	2830314	2845655
PCED1B_chr12_47074621_47241660	1/1	c0001	1299	276	71	43	121	13	26	copy fasta	PCED1B	chr12	47074621	47241660
PCED1B_chr12_47074621_47241660	0/0	c0002	1299	32	7	7	13	3	2	copy fasta	PCED1B	chr12	47074621	47241660
PCED1B_chr12_47074621_47241660	0/0	c0003	1299	8	6	2	0	0	0	copy fasta	PCED1B	chr12	47074621	47241660
PCED1B_chr12_47074621_47241660	0/0	c0004	1299	2	2	0	0	0	0	copy fasta	PCED1B	chr12	47074621	47241660
PCED1B_chr12_47074621_47241660	0/0	c0005	1299	1	1	0	0	0	0	copy fasta	PCED1B	chr12	47074621	47241660
PCED1B_chr12_47074621_47241660	0/0	c0006	1299	1	0	0	1	0	0	copy fasta	PCED1B	chr12	47074621	47241660
PCED1B_chr12_47074621_47241660	0/0	c0007	1299	1	0	0	1	0	0	copy fasta	PCED1B	chr12	47074621	47241660
PCED1B_chr12_47074621_47241660	0/0	c0008	1299	1	1	0	0	0	0	copy fasta	PCED1B	chr12	47074621	47241660