JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PCF11_chr11_83152131_83190794	1/1	c0001	5061	262	33	54	128	12	33	copy fasta	PCF11	chr11	83152131	83190794
PCF11_chr11_83152131_83190794	0/0	c0002	5061	24	0	0	23	1	0	copy fasta	PCF11	chr11	83152131	83190794
PCF11_chr11_83152131_83190794	0/0	c0003	5061	23	8	2	6	1	6	copy fasta	PCF11	chr11	83152131	83190794
PCF11_chr11_83152131_83190794	0/0	c0004	5061	18	14	4	0	0	0	copy fasta	PCF11	chr11	83152131	83190794
PCF11_chr11_83152131_83190794	0/0	c0005	5061	12	11	1	0	0	0	copy fasta	PCF11	chr11	83152131	83190794
PCF11_chr11_83152131_83190794	0/0	c0006	5061	10	0	0	10	0	0	copy fasta	PCF11	chr11	83152131	83190794
PCF11_chr11_83152131_83190794	0/0	c0007	5061	8	8	0	0	0	0	copy fasta	PCF11	chr11	83152131	83190794
PCF11_chr11_83152131_83190794	0/0	c0008	5061	5	5	0	0	0	0	copy fasta	PCF11	chr11	83152131	83190794
PCF11_chr11_83152131_83190794	0/0	c0009	5061	4	0	0	4	0	0	copy fasta	PCF11	chr11	83152131	83190794
PCF11_chr11_83152131_83190794	0/0	c0010	5061	4	0	0	4	0	0	copy fasta	PCF11	chr11	83152131	83190794
PCF11_chr11_83152131_83190794	0/0	c0011	5061	3	3	0	0	0	0	copy fasta	PCF11	chr11	83152131	83190794
PCF11_chr11_83152131_83190794	0/0	c0012	5061	2	2	0	0	0	0	copy fasta	PCF11	chr11	83152131	83190794
PCF11_chr11_83152131_83190794	0/0	c0013	5061	2	1	1	0	0	0	copy fasta	PCF11	chr11	83152131	83190794
PCF11_chr11_83152131_83190794	0/0	c0014	5061	2	2	0	0	0	0	copy fasta	PCF11	chr11	83152131	83190794
PCF11_chr11_83152131_83190794	0/0	c0015	5061	2	0	2	0	0	0	copy fasta	PCF11	chr11	83152131	83190794
PCF11_chr11_83152131_83190794	0/0	c0016	5061	2	0	2	0	0	0	copy fasta	PCF11	chr11	83152131	83190794
PCF11_chr11_83152131_83190794	0/0	c0017	5061	1	1	0	0	0	0	copy fasta	PCF11	chr11	83152131	83190794
PCF11_chr11_83152131_83190794	0/0	c0018	5061	1	1	0	0	0	0	copy fasta	PCF11	chr11	83152131	83190794
PCF11_chr11_83152131_83190794	0/0	c0019	5061	1	1	0	0	0	0	copy fasta	PCF11	chr11	83152131	83190794
PCF11_chr11_83152131_83190794	0/0	c0020	5061	1	0	0	1	0	0	copy fasta	PCF11	chr11	83152131	83190794
PCF11_chr11_83152131_83190794	0/0	c0021	5061	1	0	0	0	0	1	copy fasta	PCF11	chr11	83152131	83190794
PCF11_chr11_83152131_83190794	0/0	c0022	5061	1	1	0	0	0	0	copy fasta	PCF11	chr11	83152131	83190794
PCF11_chr11_83152131_83190794	0/0	c0023	5061	1	1	0	0	0	0	copy fasta	PCF11	chr11	83152131	83190794
PCF11_chr11_83152131_83190794	0/0	c0024	5061	1	0	0	1	0	0	copy fasta	PCF11	chr11	83152131	83190794
PCF11_chr11_83152131_83190794	0/0	c0025	5061	1	0	0	1	0	0	copy fasta	PCF11	chr11	83152131	83190794
PCF11_chr11_83152131_83190794	0/0	c0026	5061	1	0	0	1	0	0	copy fasta	PCF11	chr11	83152131	83190794
PCF11_chr11_83152131_83190794	0/0	c0027	5061	1	0	0	1	0	0	copy fasta	PCF11	chr11	83152131	83190794
PCF11_chr11_83152131_83190794	0/0	c0028	5061	1	0	1	0	0	0	copy fasta	PCF11	chr11	83152131	83190794
PCF11_chr11_83152131_83190794	0/0	c0029	5061	1	0	1	0	0	0	copy fasta	PCF11	chr11	83152131	83190794
PCGF1_chr2_74500043_74512695	1/1	c0001	780	365	88	71	152	12	40	copy fasta	PCGF1	chr2	74500043	74512695
PCGF1_chr2_74500043_74512695	0/0	c0002	780	3	0	3	0	0	0	copy fasta	PCGF1	chr2	74500043	74512695
PCGF2_chr17_38728898_38753336	0/1	c0001	1035	232	45	44	117	4	21	copy fasta	PCGF2	chr17	38728898	38753336
PCGF2_chr17_38728898_38753336	0/0	c0002	1035	156	48	32	50	6	20	copy fasta	PCGF2	chr17	38728898	38753336
PCGF2_chr17_38728898_38753336	0/0	c0003	1035	10	0	0	10	0	0	copy fasta	PCGF2	chr17	38728898	38753336
PCGF2_chr17_38728898_38753336	0/0	c0004	1035	1	0	0	1	0	0	copy fasta	PCGF2	chr17	38728898	38753336
PCGF2_chr17_38728898_38753336	0/0	c0005	1035	1	1	0	0	0	0	copy fasta	PCGF2	chr17	38728898	38753336
PCGF2_chr17_38728898_38753336	0/0	c0006	1035	1	0	0	0	0	1	copy fasta	PCGF2	chr17	38728898	38753336
PCGF3_chr4_700832_775089	1/0	c0001	729	266	71	50	105	9	30	copy fasta	PCGF3	chr4	700832	775089
PCGF3_chr4_700832_775089	0/0	c0002	723	53	12	18	14	4	5	copy fasta	PCGF3	chr4	700832	775089
PCGF3_chr4_700832_775089	0/1	c0003	729	39	1	3	32	0	2	copy fasta	PCGF3	chr4	700832	775089
PCGF3_chr4_700832_775089	0/0	c0004	729	3	3	0	0	0	0	copy fasta	PCGF3	chr4	700832	775089
PCGF3_chr4_700832_775089	0/0	c0005	729	2	1	0	0	1	0	copy fasta	PCGF3	chr4	700832	775089
PCGF3_chr4_700832_775089	0/0	c0006	729	1	0	0	0	0	1	copy fasta	PCGF3	chr4	700832	775089
PCGF3_chr4_700832_775089	0/0	c0007	723	1	0	1	0	0	0	copy fasta	PCGF3	chr4	700832	775089
PCGF3_chr4_700832_775089	0/0	c0008	723	1	0	0	1	0	0	copy fasta	PCGF3	chr4	700832	775089
PCGF5_chr10_91215663_91289337	1/1	c0001	771	316	88	66	122	16	22	copy fasta	PCGF5	chr10	91215663	91289337
PCGF5_chr10_91215663_91289337	0/0	c0002	771	2	2	0	0	0	0	copy fasta	PCGF5	chr10	91215663	91289337
PCGF6_chr10_103297796_103356140	1/0	c0001	1053	200	64	39	83	6	7	copy fasta	PCGF6	chr10	103297796	103356140
PCGF6_chr10_103297796_103356140	0/1	c0002	1059	169	26	31	77	10	24	copy fasta	PCGF6	chr10	103297796	103356140
PCGF6_chr10_103297796_103356140	0/0	c0003	1059	1	0	0	0	0	1	copy fasta	PCGF6	chr10	103297796	103356140