JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PCGF6_chr10_103297796_103356140	0/0	c0004	1059	1	1	0	0	0	0	copy fasta	PCGF6	chr10	103297796	103356140
PCGF6_chr10_103297796_103356140	0/0	c0005	1053	1	1	0	0	0	0	copy fasta	PCGF6	chr10	103297796	103356140
PCID2_chr13_113172536_113213669	1/1	c0001	1200	403	80	80	178	18	45	copy fasta	PCID2	chr13	113172536	113213669
PCID2_chr13_113172536_113213669	0/0	c0002	1200	7	7	0	0	0	0	copy fasta	PCID2	chr13	113172536	113213669
PCID2_chr13_113172536_113213669	0/0	c0003	1200	1	0	0	1	0	0	copy fasta	PCID2	chr13	113172536	113213669
PCID2_chr13_113172536_113213669	0/0	c0004	1200	1	0	0	1	0	0	copy fasta	PCID2	chr13	113172536	113213669
PCID2_chr13_113172536_113213669	0/0	c0005	1200	1	1	0	0	0	0	copy fasta	PCID2	chr13	113172536	113213669
PCID2_chr13_113172536_113213669	0/0	c0006	1200	1	0	0	0	0	1	copy fasta	PCID2	chr13	113172536	113213669
PCIF1_chr20_45929683_45953020	1/1	c0001	2115	403	82	72	187	16	44	copy fasta	PCIF1	chr20	45929683	45953020
PCIF1_chr20_45929683_45953020	0/0	c0002	2115	4	4	0	0	0	0	copy fasta	PCIF1	chr20	45929683	45953020
PCIF1_chr20_45929683_45953020	0/0	c0003	2115	3	2	1	0	0	0	copy fasta	PCIF1	chr20	45929683	45953020
PCIF1_chr20_45929683_45953020	0/0	c0004	2115	3	0	0	3	0	0	copy fasta	PCIF1	chr20	45929683	45953020
PCIF1_chr20_45929683_45953020	0/0	c0005	2115	2	2	0	0	0	0	copy fasta	PCIF1	chr20	45929683	45953020
PCIF1_chr20_45929683_45953020	0/0	c0006	2115	2	2	0	0	0	0	copy fasta	PCIF1	chr20	45929683	45953020
PCIF1_chr20_45929683_45953020	0/0	c0007	2115	1	0	0	1	0	0	copy fasta	PCIF1	chr20	45929683	45953020
PCIF1_chr20_45929683_45953020	0/0	c0008	2115	1	1	0	0	0	0	copy fasta	PCIF1	chr20	45929683	45953020
PCIF1_chr20_45929683_45953020	0/0	c0009	2115	1	1	0	0	0	0	copy fasta	PCIF1	chr20	45929683	45953020
PCIF1_chr20_45929683_45953020	0/0	c0010	2115	1	0	0	1	0	0	copy fasta	PCIF1	chr20	45929683	45953020
PCIF1_chr20_45929683_45953020	0/0	c0011	2115	1	0	1	0	0	0	copy fasta	PCIF1	chr20	45929683	45953020
PCK1_chr20_57556110_57573121	0/0	c0001	1869	142	34	14	84	6	4	copy fasta	PCK1	chr20	57556110	57573121
PCK1_chr20_57556110_57573121	1/0	c0002	1869	82	1	14	53	2	11	copy fasta	PCK1	chr20	57556110	57573121
PCK1_chr20_57556110_57573121	0/0	c0003	1869	77	0	1	74	0	2	copy fasta	PCK1	chr20	57556110	57573121
PCK1_chr20_57556110_57573121	0/1	c0004	1869	72	18	20	7	8	18	copy fasta	PCK1	chr20	57556110	57573121
PCK1_chr20_57556110_57573121	0/0	c0005	1869	19	2	9	0	0	8	copy fasta	PCK1	chr20	57556110	57573121
PCK1_chr20_57556110_57573121	0/0	c0006	1869	13	12	1	0	0	0	copy fasta	PCK1	chr20	57556110	57573121
PCK1_chr20_57556110_57573121	0/0	c0007	1869	13	3	6	0	1	3	copy fasta	PCK1	chr20	57556110	57573121
PCK1_chr20_57556110_57573121	0/0	c0008	1869	8	8	0	0	0	0	copy fasta	PCK1	chr20	57556110	57573121
PCK1_chr20_57556110_57573121	0/0	c0009	1869	6	0	3	0	1	2	copy fasta	PCK1	chr20	57556110	57573121
PCK1_chr20_57556110_57573121	0/0	c0010	1869	4	3	1	0	0	0	copy fasta	PCK1	chr20	57556110	57573121
PCK1_chr20_57556110_57573121	0/0	c0011	1869	4	3	1	0	0	0	copy fasta	PCK1	chr20	57556110	57573121
PCK1_chr20_57556110_57573121	0/0	c0012	1869	4	0	0	4	0	0	copy fasta	PCK1	chr20	57556110	57573121
PCK1_chr20_57556110_57573121	0/0	c0013	1869	2	2	0	0	0	0	copy fasta	PCK1	chr20	57556110	57573121
PCK1_chr20_57556110_57573121	0/0	c0014	1869	2	2	0	0	0	0	copy fasta	PCK1	chr20	57556110	57573121
PCK1_chr20_57556110_57573121	0/0	c0015	1869	2	0	0	2	0	0	copy fasta	PCK1	chr20	57556110	57573121
PCK1_chr20_57556110_57573121	0/0	c0016	1869	2	0	2	0	0	0	copy fasta	PCK1	chr20	57556110	57573121
PCK1_chr20_57556110_57573121	0/0	c0017	1869	1	1	0	0	0	0	copy fasta	PCK1	chr20	57556110	57573121
PCK1_chr20_57556110_57573121	0/0	c0018	1869	1	0	0	1	0	0	copy fasta	PCK1	chr20	57556110	57573121
PCK1_chr20_57556110_57573121	0/0	c0019	1869	1	0	0	1	0	0	copy fasta	PCK1	chr20	57556110	57573121
PCK1_chr20_57556110_57573121	0/0	c0020	1869	1	0	0	1	0	0	copy fasta	PCK1	chr20	57556110	57573121
PCK1_chr20_57556110_57573121	0/0	c0021	1869	1	0	1	0	0	0	copy fasta	PCK1	chr20	57556110	57573121
PCK1_chr20_57556110_57573121	0/0	c0022	1869	1	1	0	0	0	0	copy fasta	PCK1	chr20	57556110	57573121
PCK1_chr20_57556110_57573121	0/0	c0023	1869	1	1	0	0	0	0	copy fasta	PCK1	chr20	57556110	57573121
PCK1_chr20_57556110_57573121	0/0	c0024	1869	1	1	0	0	0	0	copy fasta	PCK1	chr20	57556110	57573121
PCK1_chr20_57556110_57573121	0/0	c0025	1869	1	0	0	1	0	0	copy fasta	PCK1	chr20	57556110	57573121
PCK1_chr20_57556110_57573121	0/0	c0026	1869	1	0	0	1	0	0	copy fasta	PCK1	chr20	57556110	57573121
PCK1_chr20_57556110_57573121	0/0	c0027	1869	1	1	0	0	0	0	copy fasta	PCK1	chr20	57556110	57573121
PCK1_chr20_57556110_57573121	0/0	c0028	1869	1	0	1	0	0	0	copy fasta	PCK1	chr20	57556110	57573121
PCK1_chr20_57556110_57573121	0/0	c0029	1869	1	1	0	0	0	0	copy fasta	PCK1	chr20	57556110	57573121
PCK1_chr20_57556110_57573121	0/0	c0030	1869	1	1	0	0	0	0	copy fasta	PCK1	chr20	57556110	57573121
PCK1_chr20_57556110_57573121	0/0	c0031	1869	1	0	0	1	0	0	copy fasta	PCK1	chr20	57556110	57573121