JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PCK1_chr20_57556110_57573121	0/0	c0032	1869	1	1	0	0	0	0	copy fasta	PCK1	chr20	57556110	57573121
PCK2_chr14_24089311_24109125	1/1	c0001	1923	314	70	63	129	16	34	copy fasta	PCK2	chr14	24089311	24109125
PCK2_chr14_24089311_24109125	0/0	c0002	1923	37	6	0	30	0	1	copy fasta	PCK2	chr14	24089311	24109125
PCK2_chr14_24089311_24109125	0/0	c0003	1923	26	9	0	10	0	7	copy fasta	PCK2	chr14	24089311	24109125
PCK2_chr14_24089311_24109125	0/0	c0004	1923	6	0	0	6	0	0	copy fasta	PCK2	chr14	24089311	24109125
PCK2_chr14_24089311_24109125	0/0	c0005	1923	3	0	0	3	0	0	copy fasta	PCK2	chr14	24089311	24109125
PCK2_chr14_24089311_24109125	0/0	c0006	1923	2	2	0	0	0	0	copy fasta	PCK2	chr14	24089311	24109125
PCK2_chr14_24089311_24109125	0/0	c0007	1923	2	2	0	0	0	0	copy fasta	PCK2	chr14	24089311	24109125
PCK2_chr14_24089311_24109125	0/0	c0008	1923	2	0	2	0	0	0	copy fasta	PCK2	chr14	24089311	24109125
PCK2_chr14_24089311_24109125	0/0	c0009	1923	1	1	0	0	0	0	copy fasta	PCK2	chr14	24089311	24109125
PCK2_chr14_24089311_24109125	0/0	c0010	1923	1	1	0	0	0	0	copy fasta	PCK2	chr14	24089311	24109125
PCK2_chr14_24089311_24109125	0/0	c0011	1923	1	0	0	1	0	0	copy fasta	PCK2	chr14	24089311	24109125
PCK2_chr14_24089311_24109125	0/0	c0012	1923	1	1	0	0	0	0	copy fasta	PCK2	chr14	24089311	24109125
PCK2_chr14_24089311_24109125	0/0	c0013	1923	1	0	0	1	0	0	copy fasta	PCK2	chr14	24089311	24109125
PCK2_chr14_24089311_24109125	0/0	c0014	1923	1	1	0	0	0	0	copy fasta	PCK2	chr14	24089311	24109125
PCK2_chr14_24089311_24109125	0/0	c0015	1923	1	0	0	1	0	0	copy fasta	PCK2	chr14	24089311	24109125
PCK2_chr14_24089311_24109125	0/0	c0016	1923	1	1	0	0	0	0	copy fasta	PCK2	chr14	24089311	24109125
PCK2_chr14_24089311_24109125	0/0	c0017	1923	1	1	0	0	0	0	copy fasta	PCK2	chr14	24089311	24109125
PCK2_chr14_24089311_24109125	0/0	c0018	1923	1	0	0	1	0	0	copy fasta	PCK2	chr14	24089311	24109125
PCK2_chr14_24089311_24109125	0/0	c0019	1923	1	1	0	0	0	0	copy fasta	PCK2	chr14	24089311	24109125
PCK2_chr14_24089311_24109125	0/0	c0020	1923	1	0	1	0	0	0	copy fasta	PCK2	chr14	24089311	24109125
PCLAF_chr15_64359304_64386441	1/1	c0001	336	298	94	50	92	14	46	copy fasta	PCLAF	chr15	64359304	64386441
PCLO_chr7_82749012_83167884	0/0	c0001	15432	20	7	6	3	0	4	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	c0002	15432	9	2	2	2	1	2	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	c0003	15432	8	6	1	0	0	1	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	c0004	15432	6	0	0	6	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	c0005	15462	6	0	0	6	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	c0006	15432	4	4	0	0	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	c0007	15432	4	0	1	2	0	1	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	c0008	15432	4	4	0	0	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	c0009	15432	3	3	0	0	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	c0010	15432	3	0	0	3	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	c0011	15462	3	0	3	0	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	c0012	15462	2	0	0	0	0	2	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	c0013	15432	2	0	2	0	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/1	c0014	15432	2	1	0	0	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	c0015	15432	2	2	0	0	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	c0016	15432	2	2	0	0	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	c0017	15432	2	2	0	0	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	c0018	15432	2	1	0	1	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	c0019	15432	2	2	0	0	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	c0020	15432	2	2	0	0	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	c0021	15432	2	0	0	2	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	c0022	15462	2	0	0	2	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	c0023	15462	2	0	1	1	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	c0024	15432	2	0	0	2	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	c0025	15432	2	0	0	0	1	1	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	c0026	15432	2	0	1	1	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	c0027	15432	2	0	1	0	0	1	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	c0028	15432	2	0	2	0	0	0	copy fasta	PCLO	chr7	82749012	83167884