JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PCLO_chr7_82749012_83167884	0/0	c0029	15432	1	1	0	0	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	c0030	15432	1	1	0	0	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	c0031	15432	1	1	0	0	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	c0032	15462	1	0	0	0	0	1	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	c0033	15432	1	0	1	0	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	c0034	15432	1	1	0	0	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	c0035	15432	1	1	0	0	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	c0036	15432	1	0	0	0	1	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	c0037	15432	1	0	1	0	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	c0038	15432	1	1	0	0	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	c0039	15432	1	1	0	0	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	c0040	15432	1	0	1	0	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	c0041	15432	1	1	0	0	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	c0042	15432	1	1	0	0	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	c0043	15432	1	0	0	1	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	c0044	15432	1	1	0	0	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	c0045	15432	1	1	0	0	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	c0046	15432	1	0	1	0	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	c0047	15432	1	1	0	0	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	c0048	15432	1	1	0	0	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	c0049	15432	1	1	0	0	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	c0050	15432	1	1	0	0	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	c0051	15432	1	1	0	0	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	c0052	15432	1	1	0	0	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	c0053	15432	1	1	0	0	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	c0054	15432	1	0	0	0	0	1	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	c0055	15432	1	0	0	0	1	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	c0056	15432	1	0	0	1	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	c0057	15432	1	0	1	0	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	c0058	15432	1	0	0	1	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	c0059	15432	1	1	0	0	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	c0060	15432	1	0	1	0	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	c0061	15432	1	1	0	0	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	c0062	15432	1	0	0	1	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	c0063	15432	1	0	0	1	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	c0064	15432	1	0	1	0	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	c0065	15432	1	0	0	1	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	c0066	15432	1	1	0	0	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	c0067	15432	1	0	0	0	0	1	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	c0068	15432	1	1	0	0	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	c0069	15432	1	1	0	0	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	c0070	15432	1	1	0	0	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	c0071	15432	1	1	0	0	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	c0072	15432	1	1	0	0	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	c0073	15432	1	1	0	0	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	c0074	15432	1	1	0	0	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	c0075	15432	1	1	0	0	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	1/0	c0076	15429	1	0	0	0	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	c0077	15432	1	1	0	0	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	c0078	15432	1	1	0	0	0	0	copy fasta	PCLO	chr7	82749012	83167884