JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PCLO_chr7_82749012_83167884	0/0	c0079	15432	1	1	0	0	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	c0080	15432	1	0	0	0	0	1	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	c0081	15402	1	1	0	0	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	c0082	15402	1	1	0	0	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	c0083	15402	1	1	0	0	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	c0084	15402	1	1	0	0	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	c0085	15462	1	0	0	0	0	1	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	c0086	15462	1	0	1	0	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	c0087	15462	1	0	0	0	0	1	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	c0088	15462	1	0	0	0	0	1	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	c0089	15462	1	0	0	0	0	1	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	c0090	15462	1	1	0	0	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	c0091	15462	1	0	1	0	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	c0092	15462	1	0	1	0	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	c0093	15462	1	0	0	1	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	c0094	15462	1	0	0	0	0	1	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	c0095	15462	1	0	0	0	1	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	c0096	15462	1	0	0	0	0	1	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	c0097	15462	1	0	1	0	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	c0098	15432	1	0	1	0	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	c0099	15432	1	1	0	0	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	c0100	15432	1	0	0	0	0	1	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	c0101	15432	1	0	0	1	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	c0102	15432	1	0	0	1	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	c0103	15432	1	0	0	0	0	1	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	c0104	15432	1	0	1	0	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	c0105	15432	1	0	0	0	0	1	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	c0106	15432	1	0	1	0	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	c0107	15432	1	0	1	0	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	c0108	15432	1	1	0	0	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	c0109	15432	1	0	1	0	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	c0110	15432	1	0	0	0	1	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	c0111	15432	1	1	0	0	0	0	copy fasta	PCLO	chr7	82749012	83167884
PCLO_chr7_82749012_83167884	0/0	c0112	15429	1	0	0	0	0	1	copy fasta	PCLO	chr7	82749012	83167884
PCM1_chr8_17917988_18034948	1/1	c0001	6075	99	12	15	48	6	16	copy fasta	PCM1	chr8	17917988	18034948
PCM1_chr8_17917988_18034948	0/0	c0002	6075	60	14	22	10	6	8	copy fasta	PCM1	chr8	17917988	18034948
PCM1_chr8_17917988_18034948	0/0	c0003	6075	52	2	9	38	3	0	copy fasta	PCM1	chr8	17917988	18034948
PCM1_chr8_17917988_18034948	0/0	c0004	6075	33	9	9	12	2	1	copy fasta	PCM1	chr8	17917988	18034948
PCM1_chr8_17917988_18034948	0/0	c0005	6075	20	20	0	0	0	0	copy fasta	PCM1	chr8	17917988	18034948
PCM1_chr8_17917988_18034948	0/0	c0006	6075	11	0	3	8	0	0	copy fasta	PCM1	chr8	17917988	18034948
PCM1_chr8_17917988_18034948	0/0	c0007	6075	9	1	0	7	0	1	copy fasta	PCM1	chr8	17917988	18034948
PCM1_chr8_17917988_18034948	0/0	c0008	6075	8	0	0	8	0	0	copy fasta	PCM1	chr8	17917988	18034948
PCM1_chr8_17917988_18034948	0/0	c0009	6075	7	7	0	0	0	0	copy fasta	PCM1	chr8	17917988	18034948
PCM1_chr8_17917988_18034948	0/0	c0010	6075	5	0	0	5	0	0	copy fasta	PCM1	chr8	17917988	18034948
PCM1_chr8_17917988_18034948	0/0	c0011	6075	5	5	0	0	0	0	copy fasta	PCM1	chr8	17917988	18034948
PCM1_chr8_17917988_18034948	0/0	c0012	6075	4	0	0	3	0	1	copy fasta	PCM1	chr8	17917988	18034948
PCM1_chr8_17917988_18034948	0/0	c0013	6075	4	0	0	3	1	0	copy fasta	PCM1	chr8	17917988	18034948
PCM1_chr8_17917988_18034948	0/0	c0014	6075	4	0	0	0	0	4	copy fasta	PCM1	chr8	17917988	18034948
PCM1_chr8_17917988_18034948	0/0	c0015	6075	3	0	0	3	0	0	copy fasta	PCM1	chr8	17917988	18034948
PCM1_chr8_17917988_18034948	0/0	c0016	6075	3	3	0	0	0	0	copy fasta	PCM1	chr8	17917988	18034948