JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PCM1_chr8_17917988_18034948	0/0	c0017	6075	3	2	1	0	0	0	copy fasta	PCM1	chr8	17917988	18034948
PCM1_chr8_17917988_18034948	0/0	c0018	6108	3	0	0	3	0	0	copy fasta	PCM1	chr8	17917988	18034948
PCM1_chr8_17917988_18034948	0/0	c0019	6075	2	0	0	2	0	0	copy fasta	PCM1	chr8	17917988	18034948
PCM1_chr8_17917988_18034948	0/0	c0020	6075	2	1	0	1	0	0	copy fasta	PCM1	chr8	17917988	18034948
PCM1_chr8_17917988_18034948	0/0	c0021	6075	2	2	0	0	0	0	copy fasta	PCM1	chr8	17917988	18034948
PCM1_chr8_17917988_18034948	0/0	c0022	6075	2	0	2	0	0	0	copy fasta	PCM1	chr8	17917988	18034948
PCM1_chr8_17917988_18034948	0/0	c0023	6075	2	2	0	0	0	0	copy fasta	PCM1	chr8	17917988	18034948
PCM1_chr8_17917988_18034948	0/0	c0024	6075	1	1	0	0	0	0	copy fasta	PCM1	chr8	17917988	18034948
PCM1_chr8_17917988_18034948	0/0	c0025	6075	1	1	0	0	0	0	copy fasta	PCM1	chr8	17917988	18034948
PCM1_chr8_17917988_18034948	0/0	c0026	6075	1	0	0	1	0	0	copy fasta	PCM1	chr8	17917988	18034948
PCM1_chr8_17917988_18034948	0/0	c0027	6075	1	1	0	0	0	0	copy fasta	PCM1	chr8	17917988	18034948
PCM1_chr8_17917988_18034948	0/0	c0028	6075	1	0	0	1	0	0	copy fasta	PCM1	chr8	17917988	18034948
PCM1_chr8_17917988_18034948	0/0	c0029	6075	1	1	0	0	0	0	copy fasta	PCM1	chr8	17917988	18034948
PCM1_chr8_17917988_18034948	0/0	c0030	6075	1	0	1	0	0	0	copy fasta	PCM1	chr8	17917988	18034948
PCM1_chr8_17917988_18034948	0/0	c0031	6075	1	1	0	0	0	0	copy fasta	PCM1	chr8	17917988	18034948
PCM1_chr8_17917988_18034948	0/0	c0032	6075	1	0	1	0	0	0	copy fasta	PCM1	chr8	17917988	18034948
PCM1_chr8_17917988_18034948	0/0	c0033	6075	1	1	0	0	0	0	copy fasta	PCM1	chr8	17917988	18034948
PCM1_chr8_17917988_18034948	0/0	c0034	6075	1	1	0	0	0	0	copy fasta	PCM1	chr8	17917988	18034948
PCM1_chr8_17917988_18034948	0/0	c0035	6075	1	1	0	0	0	0	copy fasta	PCM1	chr8	17917988	18034948
PCM1_chr8_17917988_18034948	0/0	c0036	6075	1	0	0	1	0	0	copy fasta	PCM1	chr8	17917988	18034948
PCM1_chr8_17917988_18034948	0/0	c0037	6075	1	1	0	0	0	0	copy fasta	PCM1	chr8	17917988	18034948
PCM1_chr8_17917988_18034948	0/0	c0038	6075	1	0	0	1	0	0	copy fasta	PCM1	chr8	17917988	18034948
PCM1_chr8_17917988_18034948	0/0	c0039	6075	1	0	0	1	0	0	copy fasta	PCM1	chr8	17917988	18034948
PCM1_chr8_17917988_18034948	0/0	c0040	6075	1	0	0	1	0	0	copy fasta	PCM1	chr8	17917988	18034948
PCM1_chr8_17917988_18034948	0/0	c0041	6075	1	0	1	0	0	0	copy fasta	PCM1	chr8	17917988	18034948
PCM1_chr8_17917988_18034948	0/0	c0042	6075	1	1	0	0	0	0	copy fasta	PCM1	chr8	17917988	18034948
PCM1_chr8_17917988_18034948	0/0	c0043	6075	1	0	0	0	0	1	copy fasta	PCM1	chr8	17917988	18034948
PCM1_chr8_17917988_18034948	0/0	c0044	6075	1	0	0	1	0	0	copy fasta	PCM1	chr8	17917988	18034948
PCM1_chr8_17917988_18034948	0/0	c0045	6075	1	0	0	1	0	0	copy fasta	PCM1	chr8	17917988	18034948
PCM1_chr8_17917988_18034948	0/0	c0046	6075	1	0	0	1	0	0	copy fasta	PCM1	chr8	17917988	18034948
PCM1_chr8_17917988_18034948	0/0	c0047	6075	1	0	0	1	0	0	copy fasta	PCM1	chr8	17917988	18034948
PCM1_chr8_17917988_18034948	0/0	c0048	6075	1	0	0	1	0	0	copy fasta	PCM1	chr8	17917988	18034948
PCMT1_chr6_149744741_149816419	0/1	c0001	684	239	84	36	89	7	22	copy fasta	PCMT1	chr6	149744741	149816419
PCMT1_chr6_149744741_149816419	1/0	c0002	684	94	8	24	38	9	14	copy fasta	PCMT1	chr6	149744741	149816419
PCMT1_chr6_149744741_149816419	0/0	c0003	684	1	0	0	1	0	0	copy fasta	PCMT1	chr6	149744741	149816419
PCMTD1_chr8_51812583_51904036	1/0	c0001	1074	233	80	33	100	6	13	copy fasta	PCMTD1	chr8	51812583	51904036
PCMTD1_chr8_51812583_51904036	0/1	c0002	1074	100	4	22	56	6	11	copy fasta	PCMTD1	chr8	51812583	51904036
PCMTD1_chr8_51812583_51904036	0/0	c0003	1074	2	0	0	2	0	0	copy fasta	PCMTD1	chr8	51812583	51904036
PCMTD1_chr8_51812583_51904036	0/0	c0004	1074	1	0	1	0	0	0	copy fasta	PCMTD1	chr8	51812583	51904036
PCMTD2_chr20_64250748_64281226	1/1	c0001	1086	281	69	58	97	12	43	copy fasta	PCMTD2	chr20	64250748	64281226
PCMTD2_chr20_64250748_64281226	0/0	c0002	1086	42	16	8	11	4	3	copy fasta	PCMTD2	chr20	64250748	64281226
PCMTD2_chr20_64250748_64281226	0/0	c0003	1086	6	6	0	0	0	0	copy fasta	PCMTD2	chr20	64250748	64281226
PCMTD2_chr20_64250748_64281226	0/0	c0004	1086	2	0	0	2	0	0	copy fasta	PCMTD2	chr20	64250748	64281226
PCMTD2_chr20_64250748_64281226	0/0	c0005	1086	1	1	0	0	0	0	copy fasta	PCMTD2	chr20	64250748	64281226
PCNA_chr20_5109953_5124958	1/1	c0001	786	386	93	70	171	15	35	copy fasta	PCNA	chr20	5109953	5124958
PCNA_chr20_5109953_5124958	0/0	c0002	786	1	1	0	0	0	0	copy fasta	PCNA	chr20	5109953	5124958
PCNA_chr20_5109953_5124958	0/0	c0003	786	1	0	0	0	0	1	copy fasta	PCNA	chr20	5109953	5124958
PCNA_chr20_5109953_5124958	0/0	c0004	786	1	0	0	1	0	0	copy fasta	PCNA	chr20	5109953	5124958
PCNA_chr20_5109953_5124958	0/0	c0005	786	1	0	0	0	1	0	copy fasta	PCNA	chr20	5109953	5124958
PCNP_chr3_101569180_101599465	1/1	c0001	537	416	85	74	199	14	42	copy fasta	PCNP	chr3	101569180	101599465