JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PCNP_chr3_101569180_101599465	0/0	c0002	537	6	6	0	0	0	0	copy fasta	PCNP	chr3	101569180	101599465
PCNP_chr3_101569180_101599465	0/0	c0003	537	1	1	0	0	0	0	copy fasta	PCNP	chr3	101569180	101599465
PCNP_chr3_101569180_101599465	0/0	c0004	537	1	0	0	1	0	0	copy fasta	PCNP	chr3	101569180	101599465
PCNT_chr21_46319156_46450769	0/0	c0001	10011	66	11	17	28	2	8	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	c0002	10011	42	2	4	28	0	8	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	c0003	10011	35	4	5	18	4	4	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	c0004	10011	14	13	1	0	0	0	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	c0005	10050	10	9	1	0	0	0	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/1	c0006	10050	7	1	4	0	1	0	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	c0007	10011	7	1	1	0	1	4	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	c0008	10011	6	6	0	0	0	0	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	c0009	10011	6	5	1	0	0	0	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	c0010	10011	6	0	5	1	0	0	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	c0011	10011	6	0	4	0	1	1	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	c0012	10011	5	0	0	4	0	1	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	c0013	10011	5	0	0	4	0	1	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	c0014	10011	4	0	3	0	1	0	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	c0015	10011	4	0	0	4	0	0	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	c0016	10011	4	4	0	0	0	0	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	c0017	10050	3	0	1	2	0	0	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	c0018	10011	3	0	3	0	0	0	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	c0019	10011	3	0	1	0	0	2	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	c0020	10011	3	3	0	0	0	0	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	c0021	10011	3	0	3	0	0	0	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	c0022	10011	3	0	0	3	0	0	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	c0023	10011	3	2	1	0	0	0	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	c0024	10011	3	3	0	0	0	0	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	c0025	10011	3	0	1	0	2	0	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	c0026	10011	2	0	0	0	0	2	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	c0027	10050	2	0	0	0	0	2	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	c0028	10050	2	2	0	0	0	0	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	c0029	10011	2	2	0	0	0	0	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	c0030	10011	2	0	0	1	0	1	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	c0031	10011	2	0	0	1	0	1	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	c0032	10011	2	0	2	0	0	0	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	c0033	10011	2	0	0	2	0	0	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	c0034	10011	2	2	0	0	0	0	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	c0035	10011	2	0	0	2	0	0	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	c0036	10011	2	0	0	2	0	0	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	c0037	10011	2	0	0	2	0	0	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	c0038	10011	2	0	0	2	0	0	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	c0039	10050	1	1	0	0	0	0	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	c0040	10050	1	0	0	1	0	0	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	c0041	10011	1	1	0	0	0	0	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	c0042	10011	1	0	0	1	0	0	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	c0043	10011	1	0	0	0	0	1	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	c0044	10011	1	0	0	1	0	0	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	c0045	10011	1	0	0	1	0	0	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	c0046	10011	1	0	1	0	0	0	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	c0047	10011	1	0	0	1	0	0	copy fasta	PCNT	chr21	46319156	46450769