JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PCNT_chr21_46319156_46450769	0/0	c0048	10011	1	0	0	1	0	0	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	c0049	10011	1	0	1	0	0	0	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	c0050	10011	1	0	0	1	0	0	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	c0051	10011	1	0	0	1	0	0	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	c0052	10011	1	0	0	0	0	1	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	c0053	10011	1	1	0	0	0	0	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	c0054	10011	1	0	0	0	1	0	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	c0055	10011	1	1	0	0	0	0	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	c0056	10011	1	1	0	0	0	0	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	c0057	10011	1	0	0	0	0	1	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	c0058	10011	1	0	0	0	0	1	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	c0059	10011	1	0	0	1	0	0	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	c0060	10011	1	0	0	0	0	1	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	c0061	10011	1	0	1	0	0	0	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	c0062	10011	1	0	1	0	0	0	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	c0063	10011	1	0	0	1	0	0	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	c0064	10011	1	0	1	0	0	0	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	c0065	10011	1	0	0	0	0	1	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	c0066	10011	1	0	1	0	0	0	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	c0067	10011	1	0	0	1	0	0	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	c0068	10011	1	1	0	0	0	0	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	c0069	10011	1	0	0	0	0	1	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	c0070	10011	1	1	0	0	0	0	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	c0071	10011	1	1	0	0	0	0	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	c0072	10011	1	1	0	0	0	0	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	c0073	10011	1	1	0	0	0	0	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	c0074	10011	1	1	0	0	0	0	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	c0075	10011	1	0	0	1	0	0	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	1/0	c0076	10011	1	0	0	0	0	0	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	c0077	10011	1	0	0	0	0	1	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	c0078	10011	1	0	0	1	0	0	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	c0079	10011	1	0	0	0	0	1	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	c0080	10011	1	0	0	0	0	1	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	c0081	10011	1	0	1	0	0	0	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	c0082	10011	1	0	0	0	0	1	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	c0083	10011	1	0	1	0	0	0	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	c0084	10011	1	0	0	1	0	0	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	c0085	10011	1	0	0	1	0	0	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	c0086	10050	1	1	0	0	0	0	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	c0087	10011	1	1	0	0	0	0	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	c0088	10011	1	1	0	0	0	0	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	c0089	9972	1	0	0	0	1	0	copy fasta	PCNT	chr21	46319156	46450769
PCNT_chr21_46319156_46450769	0/0	c0090	10011	1	0	0	1	0	0	copy fasta	PCNT	chr21	46319156	46450769
PCNX1_chr14_70902459_71120382	0/1	c0001	7026	144	28	28	55	7	25	copy fasta	PCNX1	chr14	70902459	71120382
PCNX1_chr14_70902459_71120382	0/0	c0002	7026	144	29	23	79	3	10	copy fasta	PCNX1	chr14	70902459	71120382
PCNX1_chr14_70902459_71120382	0/0	c0003	7026	11	10	1	0	0	0	copy fasta	PCNX1	chr14	70902459	71120382
PCNX1_chr14_70902459_71120382	0/0	c0004	7026	11	0	0	11	0	0	copy fasta	PCNX1	chr14	70902459	71120382
PCNX1_chr14_70902459_71120382	0/0	c0005	7026	4	4	0	0	0	0	copy fasta	PCNX1	chr14	70902459	71120382
PCNX1_chr14_70902459_71120382	0/0	c0006	7026	3	0	0	2	0	1	copy fasta	PCNX1	chr14	70902459	71120382
PCNX1_chr14_70902459_71120382	0/0	c0007	7026	3	0	0	3	0	0	copy fasta	PCNX1	chr14	70902459	71120382