JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PCNX1_chr14_70902459_71120382	0/0	c0008	7026	2	2	0	0	0	0	copy fasta	PCNX1	chr14	70902459	71120382
PCNX1_chr14_70902459_71120382	0/0	c0009	7026	2	2	0	0	0	0	copy fasta	PCNX1	chr14	70902459	71120382
PCNX1_chr14_70902459_71120382	0/0	c0010	7026	2	1	1	0	0	0	copy fasta	PCNX1	chr14	70902459	71120382
PCNX1_chr14_70902459_71120382	0/0	c0011	7026	2	1	1	0	0	0	copy fasta	PCNX1	chr14	70902459	71120382
PCNX1_chr14_70902459_71120382	0/0	c0012	7026	2	0	2	0	0	0	copy fasta	PCNX1	chr14	70902459	71120382
PCNX1_chr14_70902459_71120382	0/0	c0013	7026	2	1	1	0	0	0	copy fasta	PCNX1	chr14	70902459	71120382
PCNX1_chr14_70902459_71120382	1/0	c0014	7026	2	0	0	0	0	1	copy fasta	PCNX1	chr14	70902459	71120382
PCNX1_chr14_70902459_71120382	0/0	c0015	7026	1	0	0	1	0	0	copy fasta	PCNX1	chr14	70902459	71120382
PCNX1_chr14_70902459_71120382	0/0	c0016	7026	1	0	1	0	0	0	copy fasta	PCNX1	chr14	70902459	71120382
PCNX1_chr14_70902459_71120382	0/0	c0017	7026	1	1	0	0	0	0	copy fasta	PCNX1	chr14	70902459	71120382
PCNX1_chr14_70902459_71120382	0/0	c0018	7026	1	0	1	0	0	0	copy fasta	PCNX1	chr14	70902459	71120382
PCNX1_chr14_70902459_71120382	0/0	c0019	7026	1	0	0	1	0	0	copy fasta	PCNX1	chr14	70902459	71120382
PCNX1_chr14_70902459_71120382	0/0	c0020	7026	1	0	0	1	0	0	copy fasta	PCNX1	chr14	70902459	71120382
PCNX1_chr14_70902459_71120382	0/0	c0021	7026	1	1	0	0	0	0	copy fasta	PCNX1	chr14	70902459	71120382
PCNX1_chr14_70902459_71120382	0/0	c0022	7026	1	0	0	1	0	0	copy fasta	PCNX1	chr14	70902459	71120382
PCNX1_chr14_70902459_71120382	0/0	c0023	7026	1	1	0	0	0	0	copy fasta	PCNX1	chr14	70902459	71120382
PCNX1_chr14_70902459_71120382	0/0	c0024	7026	1	1	0	0	0	0	copy fasta	PCNX1	chr14	70902459	71120382
PCNX1_chr14_70902459_71120382	0/0	c0025	7026	1	1	0	0	0	0	copy fasta	PCNX1	chr14	70902459	71120382
PCNX1_chr14_70902459_71120382	0/0	c0026	7026	1	1	0	0	0	0	copy fasta	PCNX1	chr14	70902459	71120382
PCNX1_chr14_70902459_71120382	0/0	c0027	7026	1	1	0	0	0	0	copy fasta	PCNX1	chr14	70902459	71120382
PCNX1_chr14_70902459_71120382	0/0	c0028	7026	1	0	0	1	0	0	copy fasta	PCNX1	chr14	70902459	71120382
PCNX1_chr14_70902459_71120382	0/0	c0029	7026	1	0	0	0	0	1	copy fasta	PCNX1	chr14	70902459	71120382
PCNX1_chr14_70902459_71120382	0/0	c0030	7026	1	0	0	1	0	0	copy fasta	PCNX1	chr14	70902459	71120382
PCNX1_chr14_70902459_71120382	0/0	c0031	7026	1	1	0	0	0	0	copy fasta	PCNX1	chr14	70902459	71120382
PCNX1_chr14_70902459_71120382	0/0	c0032	7026	1	0	1	0	0	0	copy fasta	PCNX1	chr14	70902459	71120382
PCNX2_chr1_232978435_233300725	1/0	c0001	6414	36	8	11	13	1	2	copy fasta	PCNX2	chr1	232978435	233300725
PCNX2_chr1_232978435_233300725	0/0	c0002	6414	22	4	6	5	0	7	copy fasta	PCNX2	chr1	232978435	233300725
PCNX2_chr1_232978435_233300725	0/0	c0003	6414	9	0	0	7	1	1	copy fasta	PCNX2	chr1	232978435	233300725
PCNX2_chr1_232978435_233300725	0/0	c0004	6414	8	7	1	0	0	0	copy fasta	PCNX2	chr1	232978435	233300725
PCNX2_chr1_232978435_233300725	0/0	c0005	6414	6	2	2	1	0	1	copy fasta	PCNX2	chr1	232978435	233300725
PCNX2_chr1_232978435_233300725	0/1	c0006	6414	6	0	0	5	0	0	copy fasta	PCNX2	chr1	232978435	233300725
PCNX2_chr1_232978435_233300725	0/0	c0007	6414	5	3	2	0	0	0	copy fasta	PCNX2	chr1	232978435	233300725
PCNX2_chr1_232978435_233300725	0/0	c0008	6414	5	3	1	1	0	0	copy fasta	PCNX2	chr1	232978435	233300725
PCNX2_chr1_232978435_233300725	0/0	c0009	6414	5	0	1	3	0	1	copy fasta	PCNX2	chr1	232978435	233300725
PCNX2_chr1_232978435_233300725	0/0	c0010	6414	3	3	0	0	0	0	copy fasta	PCNX2	chr1	232978435	233300725
PCNX2_chr1_232978435_233300725	0/0	c0011	6414	2	0	0	2	0	0	copy fasta	PCNX2	chr1	232978435	233300725
PCNX2_chr1_232978435_233300725	0/0	c0012	6414	2	0	1	0	1	0	copy fasta	PCNX2	chr1	232978435	233300725
PCNX2_chr1_232978435_233300725	0/0	c0013	6414	2	2	0	0	0	0	copy fasta	PCNX2	chr1	232978435	233300725
PCNX2_chr1_232978435_233300725	0/0	c0014	6414	2	1	1	0	0	0	copy fasta	PCNX2	chr1	232978435	233300725
PCNX2_chr1_232978435_233300725	0/0	c0015	6414	2	2	0	0	0	0	copy fasta	PCNX2	chr1	232978435	233300725
PCNX2_chr1_232978435_233300725	0/0	c0016	6414	1	0	0	0	0	1	copy fasta	PCNX2	chr1	232978435	233300725
PCNX2_chr1_232978435_233300725	0/0	c0017	6414	1	1	0	0	0	0	copy fasta	PCNX2	chr1	232978435	233300725
PCNX2_chr1_232978435_233300725	0/0	c0018	6414	1	0	1	0	0	0	copy fasta	PCNX2	chr1	232978435	233300725
PCNX2_chr1_232978435_233300725	0/0	c0019	6414	1	0	0	0	0	1	copy fasta	PCNX2	chr1	232978435	233300725
PCNX2_chr1_232978435_233300725	0/0	c0020	6414	1	1	0	0	0	0	copy fasta	PCNX2	chr1	232978435	233300725
PCNX2_chr1_232978435_233300725	0/0	c0021	6414	1	1	0	0	0	0	copy fasta	PCNX2	chr1	232978435	233300725
PCNX2_chr1_232978435_233300725	0/0	c0022	6414	1	0	1	0	0	0	copy fasta	PCNX2	chr1	232978435	233300725
PCNX2_chr1_232978435_233300725	0/0	c0023	6414	1	1	0	0	0	0	copy fasta	PCNX2	chr1	232978435	233300725
PCNX2_chr1_232978435_233300725	0/0	c0024	6414	1	0	1	0	0	0	copy fasta	PCNX2	chr1	232978435	233300725
PCNX2_chr1_232978435_233300725	0/0	c0025	6414	1	0	0	0	0	1	copy fasta	PCNX2	chr1	232978435	233300725