JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PCNX2_chr1_232978435_233300725	0/0	c0026	6414	1	1	0	0	0	0	copy fasta	PCNX2	chr1	232978435	233300725
PCNX2_chr1_232978435_233300725	0/0	c0027	6414	1	1	0	0	0	0	copy fasta	PCNX2	chr1	232978435	233300725
PCNX2_chr1_232978435_233300725	0/0	c0028	6414	1	0	0	0	0	1	copy fasta	PCNX2	chr1	232978435	233300725
PCNX2_chr1_232978435_233300725	0/0	c0029	6414	1	0	0	1	0	0	copy fasta	PCNX2	chr1	232978435	233300725
PCNX2_chr1_232978435_233300725	0/0	c0030	6414	1	1	0	0	0	0	copy fasta	PCNX2	chr1	232978435	233300725
PCNX2_chr1_232978435_233300725	0/0	c0031	6414	1	1	0	0	0	0	copy fasta	PCNX2	chr1	232978435	233300725
PCNX2_chr1_232978435_233300725	0/0	c0032	6414	1	0	1	0	0	0	copy fasta	PCNX2	chr1	232978435	233300725
PCNX2_chr1_232978435_233300725	0/0	c0033	6414	1	1	0	0	0	0	copy fasta	PCNX2	chr1	232978435	233300725
PCNX2_chr1_232978435_233300725	0/0	c0034	6414	1	0	0	0	1	0	copy fasta	PCNX2	chr1	232978435	233300725
PCNX2_chr1_232978435_233300725	0/0	c0035	6414	1	1	0	0	0	0	copy fasta	PCNX2	chr1	232978435	233300725
PCNX2_chr1_232978435_233300725	0/0	c0036	6414	1	1	0	0	0	0	copy fasta	PCNX2	chr1	232978435	233300725
PCNX2_chr1_232978435_233300725	0/0	c0037	6414	1	1	0	0	0	0	copy fasta	PCNX2	chr1	232978435	233300725
PCNX2_chr1_232978435_233300725	0/0	c0038	6414	1	1	0	0	0	0	copy fasta	PCNX2	chr1	232978435	233300725
PCNX2_chr1_232978435_233300725	0/0	c0039	6414	1	1	0	0	0	0	copy fasta	PCNX2	chr1	232978435	233300725
PCNX2_chr1_232978435_233300725	0/0	c0040	6414	1	1	0	0	0	0	copy fasta	PCNX2	chr1	232978435	233300725
PCNX2_chr1_232978435_233300725	0/0	c0041	6414	1	1	0	0	0	0	copy fasta	PCNX2	chr1	232978435	233300725
PCNX2_chr1_232978435_233300725	0/0	c0042	6414	1	1	0	0	0	0	copy fasta	PCNX2	chr1	232978435	233300725
PCNX2_chr1_232978435_233300725	0/0	c0043	6414	1	1	0	0	0	0	copy fasta	PCNX2	chr1	232978435	233300725
PCNX2_chr1_232978435_233300725	0/0	c0044	6414	1	1	0	0	0	0	copy fasta	PCNX2	chr1	232978435	233300725
PCNX2_chr1_232978435_233300725	0/0	c0045	6414	1	1	0	0	0	0	copy fasta	PCNX2	chr1	232978435	233300725
PCNX2_chr1_232978435_233300725	0/0	c0046	6414	1	1	0	0	0	0	copy fasta	PCNX2	chr1	232978435	233300725
PCNX3_chr11_65610776_65642439	0/0	c0001	6105	109	16	24	40	8	21	copy fasta	PCNX3	chr11	65610776	65642439
PCNX3_chr11_65610776_65642439	0/0	c0002	6105	61	5	14	42	0	0	copy fasta	PCNX3	chr11	65610776	65642439
PCNX3_chr11_65610776_65642439	0/1	c0003	6105	60	17	15	22	3	2	copy fasta	PCNX3	chr11	65610776	65642439
PCNX3_chr11_65610776_65642439	0/0	c0004	6105	56	5	2	39	3	7	copy fasta	PCNX3	chr11	65610776	65642439
PCNX3_chr11_65610776_65642439	0/0	c0005	6105	16	0	0	12	1	3	copy fasta	PCNX3	chr11	65610776	65642439
PCNX3_chr11_65610776_65642439	0/0	c0006	6105	11	10	1	0	0	0	copy fasta	PCNX3	chr11	65610776	65642439
PCNX3_chr11_65610776_65642439	0/0	c0007	6093	6	6	0	0	0	0	copy fasta	PCNX3	chr11	65610776	65642439
PCNX3_chr11_65610776_65642439	0/0	c0008	6105	6	6	0	0	0	0	copy fasta	PCNX3	chr11	65610776	65642439
PCNX3_chr11_65610776_65642439	0/0	c0009	6105	5	0	0	5	0	0	copy fasta	PCNX3	chr11	65610776	65642439
PCNX3_chr11_65610776_65642439	0/0	c0010	6105	4	0	0	4	0	0	copy fasta	PCNX3	chr11	65610776	65642439
PCNX3_chr11_65610776_65642439	0/0	c0011	6105	4	4	0	0	0	0	copy fasta	PCNX3	chr11	65610776	65642439
PCNX3_chr11_65610776_65642439	0/0	c0012	6105	4	4	0	0	0	0	copy fasta	PCNX3	chr11	65610776	65642439
PCNX3_chr11_65610776_65642439	0/0	c0013	6105	3	3	0	0	0	0	copy fasta	PCNX3	chr11	65610776	65642439
PCNX3_chr11_65610776_65642439	0/0	c0014	6105	3	0	3	0	0	0	copy fasta	PCNX3	chr11	65610776	65642439
PCNX3_chr11_65610776_65642439	0/0	c0015	6105	3	0	2	0	0	1	copy fasta	PCNX3	chr11	65610776	65642439
PCNX3_chr11_65610776_65642439	0/0	c0016	6105	3	0	0	3	0	0	copy fasta	PCNX3	chr11	65610776	65642439
PCNX3_chr11_65610776_65642439	1/0	c0017	6105	2	1	0	0	0	0	copy fasta	PCNX3	chr11	65610776	65642439
PCNX3_chr11_65610776_65642439	0/0	c0018	6105	2	0	0	2	0	0	copy fasta	PCNX3	chr11	65610776	65642439
PCNX3_chr11_65610776_65642439	0/0	c0019	6105	2	1	0	1	0	0	copy fasta	PCNX3	chr11	65610776	65642439
PCNX3_chr11_65610776_65642439	0/0	c0020	6105	2	1	1	0	0	0	copy fasta	PCNX3	chr11	65610776	65642439
PCNX3_chr11_65610776_65642439	0/0	c0021	6105	2	2	0	0	0	0	copy fasta	PCNX3	chr11	65610776	65642439
PCNX3_chr11_65610776_65642439	0/0	c0022	6105	2	0	0	2	0	0	copy fasta	PCNX3	chr11	65610776	65642439
PCNX3_chr11_65610776_65642439	0/0	c0023	6105	1	0	0	0	0	1	copy fasta	PCNX3	chr11	65610776	65642439
PCNX3_chr11_65610776_65642439	0/0	c0024	6105	1	0	0	1	0	0	copy fasta	PCNX3	chr11	65610776	65642439
PCNX3_chr11_65610776_65642439	0/0	c0025	6105	1	1	0	0	0	0	copy fasta	PCNX3	chr11	65610776	65642439
PCNX3_chr11_65610776_65642439	0/0	c0026	6105	1	1	0	0	0	0	copy fasta	PCNX3	chr11	65610776	65642439
PCNX3_chr11_65610776_65642439	0/0	c0027	6105	1	0	0	1	0	0	copy fasta	PCNX3	chr11	65610776	65642439
PCNX3_chr11_65610776_65642439	0/0	c0028	6105	1	1	0	0	0	0	copy fasta	PCNX3	chr11	65610776	65642439
PCNX3_chr11_65610776_65642439	0/0	c0029	6105	1	0	0	1	0	0	copy fasta	PCNX3	chr11	65610776	65642439