JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PCSK1N_chrX_48826096_48840610	0/0	c0010	785	1	0	0	1	0	0	copy fasta	PCSK1N	chrX	48826096	48840610
PCSK1N_chrX_48826096_48840610	0/0	c0011	783	1	0	0	0	1	0	copy fasta	PCSK1N	chrX	48826096	48840610
PCSK1N_chrX_48826096_48840610	0/0	c0012	783	1	0	0	1	0	0	copy fasta	PCSK1N	chrX	48826096	48840610
PCSK1N_chrX_48826096_48840610	0/0	c0013	783	1	0	1	0	0	0	copy fasta	PCSK1N	chrX	48826096	48840610
PCSK1N_chrX_48826096_48840610	0/0	c0014	784	1	0	0	1	0	0	copy fasta	PCSK1N	chrX	48826096	48840610
PCSK1N_chrX_48826096_48840610	0/0	c0015	783	1	0	0	1	0	0	copy fasta	PCSK1N	chrX	48826096	48840610
PCSK1N_chrX_48826096_48840610	0/0	c0016	784	1	0	1	0	0	0	copy fasta	PCSK1N	chrX	48826096	48840610
PCSK1_chr5_96385333_96438248	1/1	c0001	2262	138	18	24	73	3	18	copy fasta	PCSK1	chr5	96385333	96438248
PCSK1_chr5_96385333_96438248	0/0	c0002	2262	130	34	28	49	8	11	copy fasta	PCSK1	chr5	96385333	96438248
PCSK1_chr5_96385333_96438248	0/0	c0003	2262	83	16	16	38	3	10	copy fasta	PCSK1	chr5	96385333	96438248
PCSK1_chr5_96385333_96438248	0/0	c0004	2262	17	14	3	0	0	0	copy fasta	PCSK1	chr5	96385333	96438248
PCSK1_chr5_96385333_96438248	0/0	c0005	2262	5	1	1	0	0	3	copy fasta	PCSK1	chr5	96385333	96438248
PCSK1_chr5_96385333_96438248	0/0	c0006	2262	4	0	0	4	0	0	copy fasta	PCSK1	chr5	96385333	96438248
PCSK1_chr5_96385333_96438248	0/0	c0007	2262	3	3	0	0	0	0	copy fasta	PCSK1	chr5	96385333	96438248
PCSK1_chr5_96385333_96438248	0/0	c0008	2262	3	3	0	0	0	0	copy fasta	PCSK1	chr5	96385333	96438248
PCSK1_chr5_96385333_96438248	0/0	c0009	2262	2	0	2	0	0	0	copy fasta	PCSK1	chr5	96385333	96438248
PCSK1_chr5_96385333_96438248	0/0	c0010	2262	1	1	0	0	0	0	copy fasta	PCSK1	chr5	96385333	96438248
PCSK1_chr5_96385333_96438248	0/0	c0011	2262	1	1	0	0	0	0	copy fasta	PCSK1	chr5	96385333	96438248
PCSK1_chr5_96385333_96438248	0/0	c0012	2262	1	0	0	1	0	0	copy fasta	PCSK1	chr5	96385333	96438248
PCSK1_chr5_96385333_96438248	0/0	c0013	2262	1	0	0	1	0	0	copy fasta	PCSK1	chr5	96385333	96438248
PCSK1_chr5_96385333_96438248	0/0	c0014	2262	1	0	1	0	0	0	copy fasta	PCSK1	chr5	96385333	96438248
PCSK1_chr5_96385333_96438248	0/0	c0015	2262	1	1	0	0	0	0	copy fasta	PCSK1	chr5	96385333	96438248
PCSK1_chr5_96385333_96438248	0/0	c0016	2262	1	0	1	0	0	0	copy fasta	PCSK1	chr5	96385333	96438248
PCSK2_chr20_17222040_17489578	1/1	c0001	1917	260	77	47	97	16	21	copy fasta	PCSK2	chr20	17222040	17489578
PCSK2_chr20_17222040_17489578	0/0	c0002	1917	2	2	0	0	0	0	copy fasta	PCSK2	chr20	17222040	17489578
PCSK2_chr20_17222040_17489578	0/0	c0003	1917	2	0	2	0	0	0	copy fasta	PCSK2	chr20	17222040	17489578
PCSK2_chr20_17222040_17489578	0/0	c0004	1917	1	0	0	1	0	0	copy fasta	PCSK2	chr20	17222040	17489578
PCSK2_chr20_17222040_17489578	0/0	c0005	1917	1	1	0	0	0	0	copy fasta	PCSK2	chr20	17222040	17489578
PCSK2_chr20_17222040_17489578	0/0	c0006	1917	1	1	0	0	0	0	copy fasta	PCSK2	chr20	17222040	17489578
PCSK2_chr20_17222040_17489578	0/0	c0007	1917	1	1	0	0	0	0	copy fasta	PCSK2	chr20	17222040	17489578
PCSK2_chr20_17222040_17489578	0/0	c0008	1917	1	0	0	0	0	1	copy fasta	PCSK2	chr20	17222040	17489578
PCSK2_chr20_17222040_17489578	0/0	c0009	1917	1	1	0	0	0	0	copy fasta	PCSK2	chr20	17222040	17489578
PCSK2_chr20_17222040_17489578	0/0	c0010	1917	1	0	0	1	0	0	copy fasta	PCSK2	chr20	17222040	17489578
PCSK2_chr20_17222040_17489578	0/0	c0011	1917	1	0	0	1	0	0	copy fasta	PCSK2	chr20	17222040	17489578
PCSK2_chr20_17222040_17489578	0/0	c0012	1917	1	0	1	0	0	0	copy fasta	PCSK2	chr20	17222040	17489578
PCSK2_chr20_17222040_17489578	0/0	c0013	1917	1	1	0	0	0	0	copy fasta	PCSK2	chr20	17222040	17489578
PCSK4_chr19_1476428_1495350	1/1	c0001	2268	305	36	69	151	9	38	copy fasta	PCSK4	chr19	1476428	1495350
PCSK4_chr19_1476428_1495350	0/0	c0002	2268	15	15	0	0	0	0	copy fasta	PCSK4	chr19	1476428	1495350
PCSK4_chr19_1476428_1495350	0/0	c0003	2268	14	13	0	0	1	0	copy fasta	PCSK4	chr19	1476428	1495350
PCSK4_chr19_1476428_1495350	0/0	c0004	2268	14	10	4	0	0	0	copy fasta	PCSK4	chr19	1476428	1495350
PCSK4_chr19_1476428_1495350	0/0	c0005	2268	10	2	0	8	0	0	copy fasta	PCSK4	chr19	1476428	1495350
PCSK4_chr19_1476428_1495350	0/0	c0006	2268	5	2	1	0	0	2	copy fasta	PCSK4	chr19	1476428	1495350
PCSK4_chr19_1476428_1495350	0/0	c0007	2268	5	4	1	0	0	0	copy fasta	PCSK4	chr19	1476428	1495350
PCSK4_chr19_1476428_1495350	0/0	c0008	2268	3	0	0	3	0	0	copy fasta	PCSK4	chr19	1476428	1495350
PCSK4_chr19_1476428_1495350	0/0	c0009	2268	2	0	0	2	0	0	copy fasta	PCSK4	chr19	1476428	1495350
PCSK4_chr19_1476428_1495350	0/0	c0010	2268	2	0	2	0	0	0	copy fasta	PCSK4	chr19	1476428	1495350
PCSK4_chr19_1476428_1495350	0/0	c0011	2268	2	0	0	2	0	0	copy fasta	PCSK4	chr19	1476428	1495350
PCSK4_chr19_1476428_1495350	0/0	c0012	2268	2	2	0	0	0	0	copy fasta	PCSK4	chr19	1476428	1495350
PCSK4_chr19_1476428_1495350	0/0	c0013	2268	2	2	0	0	0	0	copy fasta	PCSK4	chr19	1476428	1495350
PCSK4_chr19_1476428_1495350	0/0	c0014	2268	1	0	0	0	1	0	copy fasta	PCSK4	chr19	1476428	1495350