JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PCSK4_chr19_1476428_1495350	0/0	c0015	2268	1	0	0	0	0	1	copy fasta	PCSK4	chr19	1476428	1495350
PCSK4_chr19_1476428_1495350	0/0	c0016	2268	1	1	0	0	0	0	copy fasta	PCSK4	chr19	1476428	1495350
PCSK4_chr19_1476428_1495350	0/0	c0017	2268	1	1	0	0	0	0	copy fasta	PCSK4	chr19	1476428	1495350
PCSK4_chr19_1476428_1495350	0/0	c0018	2268	1	0	0	0	0	1	copy fasta	PCSK4	chr19	1476428	1495350
PCSK4_chr19_1476428_1495350	0/0	c0019	2268	1	1	0	0	0	0	copy fasta	PCSK4	chr19	1476428	1495350
PCSK4_chr19_1476428_1495350	0/0	c0020	2268	1	0	0	0	0	1	copy fasta	PCSK4	chr19	1476428	1495350
PCSK4_chr19_1476428_1495350	0/0	c0021	2268	1	1	0	0	0	0	copy fasta	PCSK4	chr19	1476428	1495350
PCSK4_chr19_1476428_1495350	0/0	c0022	2268	1	0	1	0	0	0	copy fasta	PCSK4	chr19	1476428	1495350
PCSK4_chr19_1476428_1495350	0/0	c0023	2268	1	0	1	0	0	0	copy fasta	PCSK4	chr19	1476428	1495350
PCSK4_chr19_1476428_1495350	0/0	c0024	2268	1	0	0	1	0	0	copy fasta	PCSK4	chr19	1476428	1495350
PCSK4_chr19_1476428_1495350	0/0	c0025	2268	1	0	0	1	0	0	copy fasta	PCSK4	chr19	1476428	1495350
PCSK4_chr19_1476428_1495350	0/0	c0026	2268	1	0	0	0	1	0	copy fasta	PCSK4	chr19	1476428	1495350
PCSK4_chr19_1476428_1495350	0/0	c0027	2268	1	1	0	0	0	0	copy fasta	PCSK4	chr19	1476428	1495350
PCSK4_chr19_1476428_1495350	0/0	c0028	2268	1	0	1	0	0	0	copy fasta	PCSK4	chr19	1476428	1495350
PCSK4_chr19_1476428_1495350	0/0	c0029	2268	1	1	0	0	0	0	copy fasta	PCSK4	chr19	1476428	1495350
PCSK4_chr19_1476428_1495350	0/0	c0030	2268	1	1	0	0	0	0	copy fasta	PCSK4	chr19	1476428	1495350
PCSK4_chr19_1476428_1495350	0/0	c0031	2268	1	1	0	0	0	0	copy fasta	PCSK4	chr19	1476428	1495350
PCSK4_chr19_1476428_1495350	0/0	c0032	2268	1	0	0	0	0	1	copy fasta	PCSK4	chr19	1476428	1495350
PCSK5_chr9_75885673_76367975	1/1	c0001	5664	17	1	1	10	1	2	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	c0002	5664	7	0	6	0	0	1	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	c0003	5664	6	1	3	1	0	1	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	c0004	5664	5	0	2	2	0	1	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	c0005	5664	5	0	3	0	1	1	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	c0006	5664	4	1	2	1	0	0	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	c0007	5664	4	1	1	0	0	2	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	c0008	5664	3	2	0	0	0	1	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	c0009	5664	3	1	0	0	0	2	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	c0010	5664	3	1	0	1	0	1	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	c0011	5664	3	3	0	0	0	0	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	c0012	5664	3	1	0	1	0	1	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	c0013	5664	2	2	0	0	0	0	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	c0014	5664	2	2	0	0	0	0	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	c0015	5664	2	0	0	0	0	2	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	c0016	5664	2	1	1	0	0	0	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	c0017	5664	2	0	2	0	0	0	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	c0018	5664	2	1	1	0	0	0	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	c0019	5664	2	0	2	0	0	0	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	c0020	5664	2	0	2	0	0	0	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	c0021	5664	2	0	1	0	1	0	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	c0022	5664	2	0	1	0	1	0	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	c0023	5664	2	2	0	0	0	0	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	c0024	5664	2	2	0	0	0	0	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	c0025	5664	2	1	1	0	0	0	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	c0026	5664	2	0	2	0	0	0	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	c0027	5664	2	2	0	0	0	0	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	c0028	5664	2	2	0	0	0	0	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	c0029	5664	1	1	0	0	0	0	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	c0030	5664	1	1	0	0	0	0	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	c0031	5664	1	0	1	0	0	0	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	c0032	5664	1	1	0	0	0	0	copy fasta	PCSK5	chr9	75885673	76367975