JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PCSK5_chr9_75885673_76367975	0/0	c0083	5664	1	1	0	0	0	0	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	c0084	5664	1	0	0	0	1	0	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	c0085	5664	1	0	1	0	0	0	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	c0086	5664	1	1	0	0	0	0	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	c0087	5664	1	1	0	0	0	0	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	c0088	5664	1	0	1	0	0	0	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	c0089	5664	1	1	0	0	0	0	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	c0090	5664	1	0	0	0	0	1	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	c0091	5664	1	1	0	0	0	0	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	c0092	5664	1	0	1	0	0	0	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	c0093	5664	1	1	0	0	0	0	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	c0094	5664	1	0	1	0	0	0	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	c0095	5664	1	0	1	0	0	0	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	c0096	5664	1	1	0	0	0	0	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	c0097	5664	1	0	0	0	0	1	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	c0098	5664	1	1	0	0	0	0	copy fasta	PCSK5	chr9	75885673	76367975
PCSK5_chr9_75885673_76367975	0/0	c0099	5664	1	0	1	0	0	0	copy fasta	PCSK5	chr9	75885673	76367975
PCSK6_chr15_101298933_101494707	1/0	c0001	2910	51	14	5	18	4	9	copy fasta	PCSK6	chr15	101298933	101494707
PCSK6_chr15_101298933_101494707	0/0	c0002	2910	47	5	8	30	0	4	copy fasta	PCSK6	chr15	101298933	101494707
PCSK6_chr15_101298933_101494707	0/0	c0003	2910	31	8	15	2	2	4	copy fasta	PCSK6	chr15	101298933	101494707
PCSK6_chr15_101298933_101494707	0/0	c0004	2910	29	5	4	13	4	3	copy fasta	PCSK6	chr15	101298933	101494707
PCSK6_chr15_101298933_101494707	0/0	c0005	2910	17	1	2	11	0	3	copy fasta	PCSK6	chr15	101298933	101494707
PCSK6_chr15_101298933_101494707	0/0	c0006	2910	14	5	3	4	0	2	copy fasta	PCSK6	chr15	101298933	101494707
PCSK6_chr15_101298933_101494707	0/0	c0007	2910	13	5	4	0	0	4	copy fasta	PCSK6	chr15	101298933	101494707
PCSK6_chr15_101298933_101494707	0/0	c0008	2901	10	10	0	0	0	0	copy fasta	PCSK6	chr15	101298933	101494707
PCSK6_chr15_101298933_101494707	0/0	c0009	2910	10	0	3	2	1	4	copy fasta	PCSK6	chr15	101298933	101494707
PCSK6_chr15_101298933_101494707	0/0	c0010	2910	9	4	2	0	0	3	copy fasta	PCSK6	chr15	101298933	101494707
PCSK6_chr15_101298933_101494707	0/0	c0011	2910	9	1	4	3	1	0	copy fasta	PCSK6	chr15	101298933	101494707
PCSK6_chr15_101298933_101494707	0/0	c0012	2910	5	0	1	4	0	0	copy fasta	PCSK6	chr15	101298933	101494707
PCSK6_chr15_101298933_101494707	0/0	c0013	2910	5	0	1	4	0	0	copy fasta	PCSK6	chr15	101298933	101494707
PCSK6_chr15_101298933_101494707	0/0	c0014	2910	5	4	1	0	0	0	copy fasta	PCSK6	chr15	101298933	101494707
PCSK6_chr15_101298933_101494707	0/0	c0015	2928	5	0	3	2	0	0	copy fasta	PCSK6	chr15	101298933	101494707
PCSK6_chr15_101298933_101494707	0/0	c0016	2901	4	4	0	0	0	0	copy fasta	PCSK6	chr15	101298933	101494707
PCSK6_chr15_101298933_101494707	0/0	c0017	2901	4	3	1	0	0	0	copy fasta	PCSK6	chr15	101298933	101494707
PCSK6_chr15_101298933_101494707	0/0	c0018	2901	3	2	1	0	0	0	copy fasta	PCSK6	chr15	101298933	101494707
PCSK6_chr15_101298933_101494707	0/0	c0019	2910	3	2	1	0	0	0	copy fasta	PCSK6	chr15	101298933	101494707
PCSK6_chr15_101298933_101494707	0/0	c0020	2901	2	2	0	0	0	0	copy fasta	PCSK6	chr15	101298933	101494707
PCSK6_chr15_101298933_101494707	0/0	c0021	2901	2	2	0	0	0	0	copy fasta	PCSK6	chr15	101298933	101494707
PCSK6_chr15_101298933_101494707	0/0	c0022	2910	2	0	0	2	0	0	copy fasta	PCSK6	chr15	101298933	101494707
PCSK6_chr15_101298933_101494707	0/0	c0023	2928	2	0	0	2	0	0	copy fasta	PCSK6	chr15	101298933	101494707
PCSK6_chr15_101298933_101494707	0/0	c0024	2928	2	0	0	2	0	0	copy fasta	PCSK6	chr15	101298933	101494707
PCSK6_chr15_101298933_101494707	0/0	c0025	2911	2	0	0	1	0	1	copy fasta	PCSK6	chr15	101298933	101494707
PCSK6_chr15_101298933_101494707	0/0	c0026	2911	2	0	2	0	0	0	copy fasta	PCSK6	chr15	101298933	101494707
PCSK6_chr15_101298933_101494707	0/0	c0027	2911	2	0	0	2	0	0	copy fasta	PCSK6	chr15	101298933	101494707
PCSK6_chr15_101298933_101494707	0/0	c0028	2910	1	0	0	1	0	0	copy fasta	PCSK6	chr15	101298933	101494707
PCSK6_chr15_101298933_101494707	0/0	c0029	2901	1	1	0	0	0	0	copy fasta	PCSK6	chr15	101298933	101494707
PCSK6_chr15_101298933_101494707	0/0	c0030	2901	1	1	0	0	0	0	copy fasta	PCSK6	chr15	101298933	101494707
PCSK6_chr15_101298933_101494707	0/0	c0031	2901	1	1	0	0	0	0	copy fasta	PCSK6	chr15	101298933	101494707
PCSK6_chr15_101298933_101494707	0/0	c0032	2901	1	1	0	0	0	0	copy fasta	PCSK6	chr15	101298933	101494707
PCSK6_chr15_101298933_101494707	0/0	c0033	2901	1	1	0	0	0	0	copy fasta	PCSK6	chr15	101298933	101494707