JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PCSK6_chr15_101298933_101494707	0/0	c0034	2901	1	0	0	0	0	1	copy fasta	PCSK6	chr15	101298933	101494707
PCSK6_chr15_101298933_101494707	0/0	c0035	2901	1	0	0	0	0	1	copy fasta	PCSK6	chr15	101298933	101494707
PCSK6_chr15_101298933_101494707	0/0	c0036	2910	1	1	0	0	0	0	copy fasta	PCSK6	chr15	101298933	101494707
PCSK6_chr15_101298933_101494707	0/1	c0037	2910	1	0	0	0	0	0	copy fasta	PCSK6	chr15	101298933	101494707
PCSK6_chr15_101298933_101494707	0/0	c0038	2910	1	0	0	0	0	1	copy fasta	PCSK6	chr15	101298933	101494707
PCSK6_chr15_101298933_101494707	0/0	c0039	2910	1	1	0	0	0	0	copy fasta	PCSK6	chr15	101298933	101494707
PCSK6_chr15_101298933_101494707	0/0	c0040	2910	1	0	1	0	0	0	copy fasta	PCSK6	chr15	101298933	101494707
PCSK6_chr15_101298933_101494707	0/0	c0041	2910	1	1	0	0	0	0	copy fasta	PCSK6	chr15	101298933	101494707
PCSK6_chr15_101298933_101494707	0/0	c0042	2910	1	0	1	0	0	0	copy fasta	PCSK6	chr15	101298933	101494707
PCSK6_chr15_101298933_101494707	0/0	c0043	2910	1	1	0	0	0	0	copy fasta	PCSK6	chr15	101298933	101494707
PCSK6_chr15_101298933_101494707	0/0	c0044	2910	1	0	0	1	0	0	copy fasta	PCSK6	chr15	101298933	101494707
PCSK6_chr15_101298933_101494707	0/0	c0045	2910	1	0	1	0	0	0	copy fasta	PCSK6	chr15	101298933	101494707
PCSK6_chr15_101298933_101494707	0/0	c0046	2910	1	1	0	0	0	0	copy fasta	PCSK6	chr15	101298933	101494707
PCSK6_chr15_101298933_101494707	0/0	c0047	2910	1	1	0	0	0	0	copy fasta	PCSK6	chr15	101298933	101494707
PCSK6_chr15_101298933_101494707	0/0	c0048	2910	1	0	0	1	0	0	copy fasta	PCSK6	chr15	101298933	101494707
PCSK6_chr15_101298933_101494707	0/0	c0049	2910	1	1	0	0	0	0	copy fasta	PCSK6	chr15	101298933	101494707
PCSK6_chr15_101298933_101494707	0/0	c0050	2910	1	0	0	1	0	0	copy fasta	PCSK6	chr15	101298933	101494707
PCSK6_chr15_101298933_101494707	0/0	c0051	2910	1	0	1	0	0	0	copy fasta	PCSK6	chr15	101298933	101494707
PCSK6_chr15_101298933_101494707	0/0	c0052	2910	1	0	0	1	0	0	copy fasta	PCSK6	chr15	101298933	101494707
PCSK6_chr15_101298933_101494707	0/0	c0053	2910	1	0	0	1	0	0	copy fasta	PCSK6	chr15	101298933	101494707
PCSK6_chr15_101298933_101494707	0/0	c0054	2910	1	0	0	0	0	1	copy fasta	PCSK6	chr15	101298933	101494707
PCSK6_chr15_101298933_101494707	0/0	c0055	2910	1	0	1	0	0	0	copy fasta	PCSK6	chr15	101298933	101494707
PCSK6_chr15_101298933_101494707	0/0	c0056	2910	1	0	0	1	0	0	copy fasta	PCSK6	chr15	101298933	101494707
PCSK6_chr15_101298933_101494707	0/0	c0057	2910	1	0	0	1	0	0	copy fasta	PCSK6	chr15	101298933	101494707
PCSK6_chr15_101298933_101494707	0/0	c0058	2910	1	1	0	0	0	0	copy fasta	PCSK6	chr15	101298933	101494707
PCSK6_chr15_101298933_101494707	0/0	c0059	2910	1	1	0	0	0	0	copy fasta	PCSK6	chr15	101298933	101494707
PCSK6_chr15_101298933_101494707	0/0	c0060	2910	1	1	0	0	0	0	copy fasta	PCSK6	chr15	101298933	101494707
PCSK6_chr15_101298933_101494707	0/0	c0061	2910	1	0	1	0	0	0	copy fasta	PCSK6	chr15	101298933	101494707
PCSK6_chr15_101298933_101494707	0/0	c0062	2928	1	0	0	1	0	0	copy fasta	PCSK6	chr15	101298933	101494707
PCSK6_chr15_101298933_101494707	0/0	c0063	2928	1	0	0	1	0	0	copy fasta	PCSK6	chr15	101298933	101494707
PCSK6_chr15_101298933_101494707	0/0	c0064	2928	1	0	0	1	0	0	copy fasta	PCSK6	chr15	101298933	101494707
PCSK6_chr15_101298933_101494707	0/0	c0065	2937	1	0	0	1	0	0	copy fasta	PCSK6	chr15	101298933	101494707
PCSK6_chr15_101298933_101494707	0/0	c0066	2929	1	0	0	1	0	0	copy fasta	PCSK6	chr15	101298933	101494707
PCSK6_chr15_101298933_101494707	0/0	c0067	2911	1	0	0	0	0	1	copy fasta	PCSK6	chr15	101298933	101494707
PCSK6_chr15_101298933_101494707	0/0	c0068	2911	1	0	0	0	0	1	copy fasta	PCSK6	chr15	101298933	101494707
PCSK6_chr15_101298933_101494707	0/0	c0069	2911	1	0	0	1	0	0	copy fasta	PCSK6	chr15	101298933	101494707
PCSK6_chr15_101298933_101494707	0/0	c0070	2911	1	0	0	0	0	1	copy fasta	PCSK6	chr15	101298933	101494707
PCSK6_chr15_101298933_101494707	0/0	c0071	2911	1	0	0	1	0	0	copy fasta	PCSK6	chr15	101298933	101494707
PCSK6_chr15_101298933_101494707	0/0	c0072	2929	1	0	1	0	0	0	copy fasta	PCSK6	chr15	101298933	101494707
PCSK6_chr15_101298933_101494707	0/0	c0073	2930	1	0	0	1	0	0	copy fasta	PCSK6	chr15	101298933	101494707
PCSK7_chr11_117199337_117237073	0/0	c0001	2358	142	26	18	84	1	13	copy fasta	PCSK7	chr11	117199337	117237073
PCSK7_chr11_117199337_117237073	1/1	c0002	2358	126	12	37	56	10	9	copy fasta	PCSK7	chr11	117199337	117237073
PCSK7_chr11_117199337_117237073	0/0	c0003	2358	44	7	4	27	1	5	copy fasta	PCSK7	chr11	117199337	117237073
PCSK7_chr11_117199337_117237073	0/0	c0004	2358	41	12	10	6	3	10	copy fasta	PCSK7	chr11	117199337	117237073
PCSK7_chr11_117199337_117237073	0/0	c0005	2358	20	0	3	4	2	11	copy fasta	PCSK7	chr11	117199337	117237073
PCSK7_chr11_117199337_117237073	0/0	c0006	2358	18	0	1	17	0	0	copy fasta	PCSK7	chr11	117199337	117237073
PCSK7_chr11_117199337_117237073	0/0	c0007	2358	13	11	2	0	0	0	copy fasta	PCSK7	chr11	117199337	117237073
PCSK7_chr11_117199337_117237073	0/0	c0008	2358	11	10	1	0	0	0	copy fasta	PCSK7	chr11	117199337	117237073
PCSK7_chr11_117199337_117237073	0/0	c0009	2358	6	5	1	0	0	0	copy fasta	PCSK7	chr11	117199337	117237073
PCSK7_chr11_117199337_117237073	0/0	c0010	2358	6	6	0	0	0	0	copy fasta	PCSK7	chr11	117199337	117237073