JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PCSK7_chr11_117199337_117237073	0/0	c0011	2358	4	0	0	4	0	0	copy fasta	PCSK7	chr11	117199337	117237073
PCSK7_chr11_117199337_117237073	0/0	c0012	2358	3	1	2	0	0	0	copy fasta	PCSK7	chr11	117199337	117237073
PCSK7_chr11_117199337_117237073	0/0	c0013	2358	3	0	0	3	0	0	copy fasta	PCSK7	chr11	117199337	117237073
PCSK7_chr11_117199337_117237073	0/0	c0014	2358	2	0	0	0	0	2	copy fasta	PCSK7	chr11	117199337	117237073
PCSK7_chr11_117199337_117237073	0/0	c0015	2358	2	0	0	2	0	0	copy fasta	PCSK7	chr11	117199337	117237073
PCSK7_chr11_117199337_117237073	0/0	c0016	2358	2	0	2	0	0	0	copy fasta	PCSK7	chr11	117199337	117237073
PCSK7_chr11_117199337_117237073	0/0	c0017	2358	2	0	2	0	0	0	copy fasta	PCSK7	chr11	117199337	117237073
PCSK7_chr11_117199337_117237073	0/0	c0018	2358	1	0	0	1	0	0	copy fasta	PCSK7	chr11	117199337	117237073
PCSK7_chr11_117199337_117237073	0/0	c0019	2358	1	0	0	1	0	0	copy fasta	PCSK7	chr11	117199337	117237073
PCSK7_chr11_117199337_117237073	0/0	c0020	2358	1	0	0	1	0	0	copy fasta	PCSK7	chr11	117199337	117237073
PCSK7_chr11_117199337_117237073	0/0	c0021	2358	1	0	0	1	0	0	copy fasta	PCSK7	chr11	117199337	117237073
PCSK7_chr11_117199337_117237073	0/0	c0022	2358	1	1	0	0	0	0	copy fasta	PCSK7	chr11	117199337	117237073
PCSK7_chr11_117199337_117237073	0/0	c0023	2358	1	1	0	0	0	0	copy fasta	PCSK7	chr11	117199337	117237073
PCSK7_chr11_117199337_117237073	0/0	c0024	2358	1	0	0	1	0	0	copy fasta	PCSK7	chr11	117199337	117237073
PCSK7_chr11_117199337_117237073	0/0	c0025	2358	1	0	0	0	1	0	copy fasta	PCSK7	chr11	117199337	117237073
PCSK7_chr11_117199337_117237073	0/0	c0026	2358	1	0	1	0	0	0	copy fasta	PCSK7	chr11	117199337	117237073
PCSK7_chr11_117199337_117237073	0/0	c0027	2358	1	0	0	1	0	0	copy fasta	PCSK7	chr11	117199337	117237073
PCSK7_chr11_117199337_117237073	0/0	c0028	2358	1	1	0	0	0	0	copy fasta	PCSK7	chr11	117199337	117237073
PCSK7_chr11_117199337_117237073	0/0	c0029	2358	1	0	0	1	0	0	copy fasta	PCSK7	chr11	117199337	117237073
PCSK7_chr11_117199337_117237073	0/0	c0030	2358	1	0	0	1	0	0	copy fasta	PCSK7	chr11	117199337	117237073
PCSK7_chr11_117199337_117237073	0/0	c0031	2358	1	1	0	0	0	0	copy fasta	PCSK7	chr11	117199337	117237073
PCSK7_chr11_117199337_117237073	0/0	c0032	2358	1	0	0	1	0	0	copy fasta	PCSK7	chr11	117199337	117237073
PCSK9_chr1_55034548_55069852	0/1	c0001	2079	251	30	47	130	12	31	copy fasta	PCSK9	chr1	55034548	55069852
PCSK9_chr1_55034548_55069852	0/0	c0002	2079	25	17	2	4	0	2	copy fasta	PCSK9	chr1	55034548	55069852
PCSK9_chr1_55034548_55069852	0/0	c0003	2079	22	6	5	5	4	2	copy fasta	PCSK9	chr1	55034548	55069852
PCSK9_chr1_55034548_55069852	0/0	c0004	2082	22	0	6	11	1	4	copy fasta	PCSK9	chr1	55034548	55069852
PCSK9_chr1_55034548_55069852	0/0	c0005	2082	10	0	0	10	0	0	copy fasta	PCSK9	chr1	55034548	55069852
PCSK9_chr1_55034548_55069852	0/0	c0006	2079	5	5	0	0	0	0	copy fasta	PCSK9	chr1	55034548	55069852
PCSK9_chr1_55034548_55069852	0/0	c0007	2082	5	4	1	0	0	0	copy fasta	PCSK9	chr1	55034548	55069852
PCSK9_chr1_55034548_55069852	0/0	c0008	2082	5	0	2	1	1	1	copy fasta	PCSK9	chr1	55034548	55069852
PCSK9_chr1_55034548_55069852	0/0	c0009	2079	4	4	0	0	0	0	copy fasta	PCSK9	chr1	55034548	55069852
PCSK9_chr1_55034548_55069852	0/0	c0010	2079	4	0	0	4	0	0	copy fasta	PCSK9	chr1	55034548	55069852
PCSK9_chr1_55034548_55069852	1/0	c0011	2079	3	1	1	0	0	0	copy fasta	PCSK9	chr1	55034548	55069852
PCSK9_chr1_55034548_55069852	0/0	c0012	2079	3	3	0	0	0	0	copy fasta	PCSK9	chr1	55034548	55069852
PCSK9_chr1_55034548_55069852	0/0	c0013	2079	3	3	0	0	0	0	copy fasta	PCSK9	chr1	55034548	55069852
PCSK9_chr1_55034548_55069852	0/0	c0014	2082	3	3	0	0	0	0	copy fasta	PCSK9	chr1	55034548	55069852
PCSK9_chr1_55034548_55069852	0/0	c0015	2082	3	3	0	0	0	0	copy fasta	PCSK9	chr1	55034548	55069852
PCSK9_chr1_55034548_55069852	0/0	c0016	2082	3	3	0	0	0	0	copy fasta	PCSK9	chr1	55034548	55069852
PCSK9_chr1_55034548_55069852	0/0	c0017	2082	3	3	0	0	0	0	copy fasta	PCSK9	chr1	55034548	55069852
PCSK9_chr1_55034548_55069852	0/0	c0018	2079	2	0	0	2	0	0	copy fasta	PCSK9	chr1	55034548	55069852
PCSK9_chr1_55034548_55069852	0/0	c0019	2079	2	1	1	0	0	0	copy fasta	PCSK9	chr1	55034548	55069852
PCSK9_chr1_55034548_55069852	0/0	c0020	2079	2	0	2	0	0	0	copy fasta	PCSK9	chr1	55034548	55069852
PCSK9_chr1_55034548_55069852	0/0	c0021	2082	2	0	0	2	0	0	copy fasta	PCSK9	chr1	55034548	55069852
PCSK9_chr1_55034548_55069852	0/0	c0022	2082	2	0	1	1	0	0	copy fasta	PCSK9	chr1	55034548	55069852
PCSK9_chr1_55034548_55069852	0/0	c0023	2079	1	1	0	0	0	0	copy fasta	PCSK9	chr1	55034548	55069852
PCSK9_chr1_55034548_55069852	0/0	c0024	2079	1	1	0	0	0	0	copy fasta	PCSK9	chr1	55034548	55069852
PCSK9_chr1_55034548_55069852	0/0	c0025	2079	1	0	0	1	0	0	copy fasta	PCSK9	chr1	55034548	55069852
PCSK9_chr1_55034548_55069852	0/0	c0026	2079	1	0	0	0	0	1	copy fasta	PCSK9	chr1	55034548	55069852
PCSK9_chr1_55034548_55069852	0/0	c0027	2079	1	1	0	0	0	0	copy fasta	PCSK9	chr1	55034548	55069852
PCSK9_chr1_55034548_55069852	0/0	c0028	2079	1	0	0	0	0	1	copy fasta	PCSK9	chr1	55034548	55069852