JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PCSK9_chr1_55034548_55069852	0/0	c0029	2079	1	1	0	0	0	0	copy fasta	PCSK9	chr1	55034548	55069852
PCSK9_chr1_55034548_55069852	0/0	c0030	2079	1	0	0	1	0	0	copy fasta	PCSK9	chr1	55034548	55069852
PCSK9_chr1_55034548_55069852	0/0	c0031	2079	1	0	0	0	0	1	copy fasta	PCSK9	chr1	55034548	55069852
PCSK9_chr1_55034548_55069852	0/0	c0032	2079	1	0	0	0	0	1	copy fasta	PCSK9	chr1	55034548	55069852
PCSK9_chr1_55034548_55069852	0/0	c0033	2079	1	0	0	1	0	0	copy fasta	PCSK9	chr1	55034548	55069852
PCSK9_chr1_55034548_55069852	0/0	c0034	2079	1	0	0	1	0	0	copy fasta	PCSK9	chr1	55034548	55069852
PCSK9_chr1_55034548_55069852	0/0	c0035	2079	1	0	0	0	0	1	copy fasta	PCSK9	chr1	55034548	55069852
PCSK9_chr1_55034548_55069852	0/0	c0036	2079	1	0	0	0	0	1	copy fasta	PCSK9	chr1	55034548	55069852
PCSK9_chr1_55034548_55069852	0/0	c0037	2079	1	1	0	0	0	0	copy fasta	PCSK9	chr1	55034548	55069852
PCSK9_chr1_55034548_55069852	0/0	c0038	2079	1	1	0	0	0	0	copy fasta	PCSK9	chr1	55034548	55069852
PCSK9_chr1_55034548_55069852	0/0	c0039	2079	1	1	0	0	0	0	copy fasta	PCSK9	chr1	55034548	55069852
PCSK9_chr1_55034548_55069852	0/0	c0040	2079	1	0	1	0	0	0	copy fasta	PCSK9	chr1	55034548	55069852
PCSK9_chr1_55034548_55069852	0/0	c0041	2082	1	1	0	0	0	0	copy fasta	PCSK9	chr1	55034548	55069852
PCSK9_chr1_55034548_55069852	0/0	c0042	2082	1	1	0	0	0	0	copy fasta	PCSK9	chr1	55034548	55069852
PCSK9_chr1_55034548_55069852	0/0	c0043	2082	1	1	0	0	0	0	copy fasta	PCSK9	chr1	55034548	55069852
PCSK9_chr1_55034548_55069852	0/0	c0044	2082	1	0	1	0	0	0	copy fasta	PCSK9	chr1	55034548	55069852
PCSK9_chr1_55034548_55069852	0/0	c0045	2082	1	1	0	0	0	0	copy fasta	PCSK9	chr1	55034548	55069852
PCSK9_chr1_55034548_55069852	0/0	c0046	2082	1	1	0	0	0	0	copy fasta	PCSK9	chr1	55034548	55069852
PCTP_chr17_55746051_55782374	0/0	c0001	645	148	7	29	92	4	16	copy fasta	PCTP	chr17	55746051	55782374
PCTP_chr17_55746051_55782374	0/0	c0002	645	94	54	13	19	2	6	copy fasta	PCTP	chr17	55746051	55782374
PCTP_chr17_55746051_55782374	0/0	c0003	645	33	23	3	3	2	2	copy fasta	PCTP	chr17	55746051	55782374
PCTP_chr17_55746051_55782374	0/0	c0004	645	5	5	0	0	0	0	copy fasta	PCTP	chr17	55746051	55782374
PCTP_chr17_55746051_55782374	0/0	c0005	645	2	0	0	2	0	0	copy fasta	PCTP	chr17	55746051	55782374
PCTP_chr17_55746051_55782374	0/0	c0006	645	2	0	1	1	0	0	copy fasta	PCTP	chr17	55746051	55782374
PCTP_chr17_55746051_55782374	0/0	c0007	645	1	1	0	0	0	0	copy fasta	PCTP	chr17	55746051	55782374
PCTP_chr17_55746051_55782374	0/0	c0008	645	1	0	0	1	0	0	copy fasta	PCTP	chr17	55746051	55782374
PCTP_chr17_55746051_55782374	0/0	c0009	645	1	1	0	0	0	0	copy fasta	PCTP	chr17	55746051	55782374
PCTP_chr17_55746051_55782374	0/0	c0010	645	1	1	0	0	0	0	copy fasta	PCTP	chr17	55746051	55782374
PCYOX1L_chr5_149353046_149374653	1/1	c0001	1485	233	45	44	114	8	20	copy fasta	PCYOX1L	chr5	149353046	149374653
PCYOX1L_chr5_149353046_149374653	0/0	c0002	1485	92	19	9	44	6	14	copy fasta	PCYOX1L	chr5	149353046	149374653
PCYOX1L_chr5_149353046_149374653	0/0	c0003	1485	21	4	10	0	2	5	copy fasta	PCYOX1L	chr5	149353046	149374653
PCYOX1L_chr5_149353046_149374653	0/0	c0004	1485	8	7	1	0	0	0	copy fasta	PCYOX1L	chr5	149353046	149374653
PCYOX1L_chr5_149353046_149374653	0/0	c0005	1485	6	5	1	0	0	0	copy fasta	PCYOX1L	chr5	149353046	149374653
PCYOX1L_chr5_149353046_149374653	0/0	c0006	1485	3	3	0	0	0	0	copy fasta	PCYOX1L	chr5	149353046	149374653
PCYOX1L_chr5_149353046_149374653	0/0	c0007	1485	3	0	3	0	0	0	copy fasta	PCYOX1L	chr5	149353046	149374653
PCYOX1L_chr5_149353046_149374653	0/0	c0008	1485	2	2	0	0	0	0	copy fasta	PCYOX1L	chr5	149353046	149374653
PCYOX1L_chr5_149353046_149374653	0/0	c0009	1485	2	0	0	0	0	2	copy fasta	PCYOX1L	chr5	149353046	149374653
PCYOX1L_chr5_149353046_149374653	0/0	c0010	1485	1	1	0	0	0	0	copy fasta	PCYOX1L	chr5	149353046	149374653
PCYOX1L_chr5_149353046_149374653	0/0	c0011	1485	1	0	0	0	0	1	copy fasta	PCYOX1L	chr5	149353046	149374653
PCYOX1_chr2_70253137_70286185	1/1	c0001	1518	320	70	55	150	6	37	copy fasta	PCYOX1	chr2	70253137	70286185
PCYOX1_chr2_70253137_70286185	0/0	c0002	1518	50	1	7	39	1	2	copy fasta	PCYOX1	chr2	70253137	70286185
PCYOX1_chr2_70253137_70286185	0/0	c0003	1518	18	10	3	0	0	5	copy fasta	PCYOX1	chr2	70253137	70286185
PCYOX1_chr2_70253137_70286185	0/0	c0004	1518	12	2	8	0	1	1	copy fasta	PCYOX1	chr2	70253137	70286185
PCYOX1_chr2_70253137_70286185	0/0	c0005	1518	5	5	0	0	0	0	copy fasta	PCYOX1	chr2	70253137	70286185
PCYOX1_chr2_70253137_70286185	0/0	c0006	1518	4	0	0	4	0	0	copy fasta	PCYOX1	chr2	70253137	70286185
PCYOX1_chr2_70253137_70286185	0/0	c0007	1518	2	0	0	2	0	0	copy fasta	PCYOX1	chr2	70253137	70286185
PCYOX1_chr2_70253137_70286185	0/0	c0008	1518	2	2	0	0	0	0	copy fasta	PCYOX1	chr2	70253137	70286185
PCYOX1_chr2_70253137_70286185	0/0	c0009	1518	1	1	0	0	0	0	copy fasta	PCYOX1	chr2	70253137	70286185
PCYOX1_chr2_70253137_70286185	0/0	c0010	1518	1	0	0	1	0	0	copy fasta	PCYOX1	chr2	70253137	70286185
PCYOX1_chr2_70253137_70286185	0/0	c0011	1518	1	0	0	1	0	0	copy fasta	PCYOX1	chr2	70253137	70286185